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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTCAATTTCGCAGGCAAATCACTTCTCAAACTAGATGGCCCTGACTCCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcgcaaacaaaaaccaacccaactcttatataaaagataagtaacaagagaatcaaacggtgtacaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G41560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 6
AATTCTCAATTTCGCAGGCAAATCACTTCTCAAACTAGATGGCCCTGACTCCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcgcaaacaaaaaccaacccaactcttatataaaagataagtaacaagagaatcaaacggtgtacaaacag-----------------
  |  |||  |||  ||| |||   ||||| || ||   |||  | ||| |||      ||||||||||| |||| |||||  |||||||||||||||||||||  ||     |    ||   |  |   |   | | ||  | |  |||| | |      |  |  | ||     |                  
GGTCTTCACCTTCCAAGGGAAACGGCTTCTAAAGCTCACTGGTTCAGACGCCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGgtactgtt-attgattttaattgattc--tttccaaacaaccggtt-gtaaaatggctgatattctttttatttttattattttttacgtaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125098518|gb|EL154640.1|EL154640
EST:     CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAG                         GTGTTCAATGTAGATC
genomic: CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcg ... gtacaaacagGTGTTCAATG-AGATC
EST: gi|125207953|gb|EL222907.1|EL222907
EST:     TCATCTTCAACTCCTTCGTCTTTTGCCAG                         GTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAA
genomic: TCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcg ... gtacaaacagGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAA
EST: gi|124757855|gb|EH847985.1|EH847985
EST:     CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAG                         GTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGA
genomic: CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcg ... gtacaaacagGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGA