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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGgtaaagataagtttctcttgtctagattgttgcacttcccgctaagtgactgacacttttttgatctcgtattcttattcttatcaag

Basic information

species Arabidopsis thaliana
transcript AT2G40600.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425484|gb|EG468076.1|EG468076
EST:     CTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAG                         GTGCATTTTGTTTTGTTCGCGGACGACATATTCAGCGTATGGGTAAACAAA
genomic: CTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGgtaaagataa ... tcttatcaagGTGCATTTTGTTTTGTTCGCGGACGACATATTCAGCGTATGGGTAAACAAA
EST: gi|164221891|gb|ES063061.1|ES063061
EST:     CTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTGAAGAG                         GTGCATTTTGTTTTGTTCGCGGACG
genomic: CTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGgtaaagataa ... tcttatcaagGTGCATTTTGTTTTGTTCGCGGACG