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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtttgatcaaaatcccaagaaagaactctaaatgttaattgtagaaacattttaaacctaatgatgccctttgtaatgtactggcag

Basic information

species Arabidopsis thaliana
transcript AT2G39690.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384467|gb|EG427059.1|EG427059
EST:     AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
EST: gi|116384469|gb|EG427061.1|EG427061
EST:     AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
EST: gi|116384466|gb|EG427058.1|EG427058
EST:     AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
EST: gi|116383991|gb|EG426583.1|EG426583
EST:     AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
EST: gi|116383986|gb|EG426578.1|EG426578
EST:     CACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: CACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
EST: gi|116383984|gb|EG426576.1|EG426576
EST:     AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
EST: gi|116384465|gb|EG427057.1|EG427057
EST:     AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG                         GCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT
genomic: AGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAGgtaacttgtt ... gtactggcagGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGCTTTGGCGATTGAACAT