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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgtaacatttgccaatagccatttcctgtttcaacatggttttgtgcagaaatgattgaagttcttgctaagtatttaggcactgtaaattaattggaaag...

Basic information

species Arabidopsis thaliana
transcript AT2G39670.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 5'ss of exon 6
CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgt------aacatttgccaatagccatttcctgtt--tcaacatggttttgtgcagaaatg--attgaa-------gttcttgctaagtatttaggcactgtaaattaattggaaag
   |||| | || |||||||||||||| || |||||||| ||||||||||| ||||||||||| || |||||  | || || ||||| || |||||||||||      |||         |    | ||||| ||  ||||   | ||||||| |  | ||  |||| |        |  ||  || |  |||   |  ||    ||  || |  ||
GACGTTCCAACACAGGGTGACAAATGTAGTGTTCATGGGGATGGGTGAGCCTATGTTGAACCTGAAATCAGTTTTAGAGGCACATCGATGCTTGAACAAGgtttgccaaactgaatttttttcttagttccttttgctcaagtagtttttgtgaatcattgtcattgtatcatacaataatttgtatgcctttcaactttgattttttttttggcag

upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G168412_T01 (Zea mays), 5'ss of exon 5
CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgtaacatttgccaatagc-------catttcctgtttcaacatggttttgtgcagaaatg---attgaagttcttgctaagtatttaggcactgta--aattaattggaaag-----------
   |||||| || |||||||||||||| || |||||||| ||||||||||| ||| ||||||| |||||||| || || || || |  || || || |||||    ||  | | || |       |||| |     ||    |  |||  |||   |||      ||||  |||| | |  ||       ||| ||  || |   ||||              
GACGTTCAAACACAGGGTGACAAATGTTGTGTTCATGGGGATGGGTGAGCCCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtc-tgttgacaagtaactaggctacattcctctcatcctgttaatttgatgcgacaatttaccatgaatatctttccatataagctataactttaacaagtgcgtggatttcatgctgtcag

upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G395039_T01 (Zea mays), 5'ss of exon 4
CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgtaacatttgccaatagc-------catttcctgtttcaacatggttttgtgcagaaatg---attgaagttcttgctaagta--tttaggcactgtaaattaattggaaag-----------
   ||||||  | |||||||||||||| || ||||| || ||||||||||| ||| ||||||| |||||||| || || || || |  || || || |||||    ||  | | || |       |||| |     ||    |  |||  |||   |||      |||   |||  | |  ||   |  | |  |   || |   ||||              
GACGTTCAAATACAGGGTGACAAATGTTGTGTTCATTGGGATGGGTGAGCCCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtc-tgttgacaagtaactaggctacattcctctcatcctgttaatttgatgcgacaatttaccatgagtatctctccatataagctatgactttaacaagtgcgtggatttcatgctgtcag

upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G07450.1 (Glycine max), 5'ss of exon 6
CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgtaac-------atttgccaatagccatttcctgtttcaacatg-gttttgtgc-agaaatgattga-agttcttgctaagtatttaggcactgtaaattaattggaaag
 || |||||| |||||||||||||||| || || |||||||||||||| || ||||| ||||| ||| |||||||||| || || ||||| ||||| ||||| |        || ||  |   | ||||   || ||| | |||   | | ||| | |   |||||| | | | |    | | | |   || |  || |           
GGTCTTCAAGAATAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAGgtgaataaatgaatgtgatatgtgacattatttgcttccaaatgcactctatgccacatgggattgagaatgcatatgtaatttatcttcaatagaagtg----------

upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G41500.1 (Glycine max), 5'ss of exon 6
CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgt-aacatttgccaatagc------catttcctgtttcaacatggttttgtgcagaaatgattgaagttcttgctaagtatttaggcactgtaaattaattggaaag
 || |||||| |||||||||||||||| || || |||||||||||||| || ||||| ||||| ||| |||||||||| || || | ||| ||||| ||||| ||||  || |  |         ||||   |  ||| | ||| ||   |         |  |   ||||   | || ||| ||  |    |  || ||       
GGTCTTCAAGAATAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAGgtgaacaaatgactgtgatatgtgacattatttccttccaaatgcttacttttgagttgcaacggtattcta--tgag-attgagatatcaaactttcatgta----

upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv13s0019g01070.t01 (Vitis vinifera), 5'ss of exon 6
CGTGTTCAAGCATAGGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTACTTGATGCTCATCGTTGTTTGAACAAGgtaacatttgccaatagccatttcctgtttcaacatggttttgtgcagaaatgattgaagttcttgctaagtatttagg--cactgtaaattaattggaaag---
  | || ||||| ||||||||||||||||| || ||||||||||| || || ||||||||||| || |||||  |||| ||||| ||||| ||||| ||||| || |     | || |  |||| ||    |   |   |           || ||  | || || |       | | |  ||    || | ||  |        
GATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTATGGGAATGGGCGAACCAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcactt-----attaactctttcatgcacaattgttaatcatctatatgctggttctaattttttcatttagctaaagttcataacaagtcaaccgatttttct