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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGgtatatttgtgattttgttcactctcataactaattagttgatctgcagattgaactcattttctagaatggcagtgtactatacattagtctcttatcaggttctctaatgtgtttttgaacag

Basic information

species Arabidopsis thaliana
transcript AT2G39080.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39080.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G10460.2 (Glycine max), 5'ss of exon 5
ACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGgtatatttgtgattttgttcactctcataactaattagttgatctgcagattgaactcattttctagaatggcagtgtactatacattagtctcttatcaggttctctaatgtgtttttgaacag
| || |  || |||||||||| |||| |||||    |||| || | | ||  ||||||||||||| ||||| ||||| ||||||||||||||     | | | |   ||   | |||||     | | || |  || | | ||   | ||         |||||           ||||| ||||| | |  || | | |  |   |        
AAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGgtcagaatttaagtgcattt--tatcatattctgtaaattaacatg-acagtggttttatccat--atttggca-----------attagcctctt-taaatttgtttgacatacat--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164178251|gb|ES061629.1|ES061629
EST:     AATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAG                         GATGCAGCATCGCTGGCAGTTGCAATCA
genomic: AATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGgtatatttgt ... ttttgaacagGATGCAGCATCGCTGGCAGTTGCAATCA