1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGAGCTCGAGCGGGGCTCGGCTCAAGGAGAATCTTGATGTTTTTGACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcatctttctttttttttctcgatgaatcaaacgacaatttcggtttggtttcttgtcattattgatcttccctcctcttcaccatcttgttttcctcgaccccatcatgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcag
species | Arabidopsis thaliana |
transcript | AT2G37760.5 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGG-A- GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|116448013|gb|EG490605.1|EG490605
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCTAGG-A- GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|86075489|gb|DR371246.1|DR371246
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGG-A- GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|86075291|gb|DR371048.1|DR371048
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGG-A- GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGCTCGAGCGGGGCTCGGCTCAAGGAGAATCTTGATGTTTTTGACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcatctttctttttttttctcgatgaatcaaacgacaatttcggtttggtttcttgtcattattgatcttccctcctcttcaccatcttgttttcctcgaccccatcatgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA