1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCAAAGAGCTCGAGCGGGGCTCGGCTCAAGGAGAATCTTGATGTTTTTGACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctttcatctttctttttttttctcgatgaatcaaacgacaatttcggtttggtttcttgtcattattgatcttccctcctcttcaccatcttgttttcctcgaccccatcatgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcag
species | Arabidopsis thaliana |
transcript | AT2G37760.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|86075489|gb|DR371246.1|DR371246
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|116412485|gb|EG455077.1|EG455077
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|116448013|gb|EG490605.1|EG490605
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCTAG GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATEST: gi|124764743|gb|EH854873.1|EH854873
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: CTTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCA
genomic: C-TGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAAGAGCTCGAGCGGGGCTCGGCTCAAGGAGAATCTTGATGTTTTTGACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctttcatctttctttttttttctcgatgaatcaaacgacaatttcggtttggtttcttgtcattattgatcttccctcctcttcaccatcttgttttcctcgaccccatcatgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA