1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGTGGCATTCGAGAATTACTTGTGGGAAAAGATGACGAGCTACTTGAGACAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttcattatgaccaaaagggcttcgtaaactgcataatccatcaacagttaccatatcttttaaaccagttttgcttctcctaatccatggtgtttattatttgagcag
species | Arabidopsis thaliana |
transcript | AT2G37660.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG GCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAGEST: gi|125204337|gb|EL219291.1|EL219291
genomic: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
EST: AAGAGCTGATGTTGCAGAAGTCTGTGTTCAG GCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAGEST: gi|124946600|gb|EL022507.1|EL022507
genomic: AAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
EST: AGAAACAAGAACAATTCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG GCATTGCAGCTTGAGGAGGCAAAEST: gi|47831378|gb|CK121062.1|CK121062
genomic: AGAAACAAGAACAA-TCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAA
EST: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG GCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAGEST: gi|125193211|gb|EL208165.1|EL208165
genomic: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
EST: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG GCATTGCAGCTTGA
genomic: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGCATTCGAGAATTACTTGTGGGAAAAGATGACGAGCTACTTGAGACAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttcattatgaccaaaagggcttcgtaaactgcataatccatcaacagttaccatatcttttaaaccagttttgcttctcctaatccatggtgtttattatttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT