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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAAgtagagtgacttctacttagcatattataattaggtaaccaaaatgttctgcttttgtggtctcagactctcagtagcttctgtggcattattatag

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082869|gb|DR378628.1|DR378628
EST:     TTACATTTACACCCAAA                         GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
genomic: TTACATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
EST: gi|116467378|gb|EG509970.1|EG509970
EST:     ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAA                         GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
genomic: ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
EST: gi|125053773|gb|EL124751.1|EL124751
EST:     CATTTACACCCAAA                         GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
genomic: CATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAA                         GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
genomic: ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG