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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGGTGAATCTGTGGGTTATCAGATTCGTCTAGAATCAAAGCGTTCTGATCAAACACGATTGCTATTTTGCACTACTGGTGTTTTACTCCGGCGGCTGgtaagatacaactattctactactcaactactcatcacatgtagttgaagtatgatattttaagcttctttactttgaaatgtcgaatcaattgttgaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G35920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G399212_T01 (Zea mays), 5'ss of exon 8
CATTGGTGAATCTGTGGGTTATCAGATTCGTCTAGAATCAAAGCGTTCTGATCAAACACGATTGCTATTTTGCACTACTGGTGTTTTACTCCGGCGGCTGgtaagataca-actattctac-tactcaactactcatcacatgtagttgaagtatgatattttaagcttctttactttgaaatgtcgaatcaattgttgaaatgcag
  | || ||  |||| || || |||||||| || |||||||| || ||||  |||||||| ||||| || ||||||||||| ||||| ||  |  | |||||| |    | | |||| | | || |||  || | |       |      | |      |   |||| | |  |||  ||      |   |     |||| |     
ACTCGGCGAGGCTGTTGGATACCAGATTCGCCTTGAATCAAAACGGTCTGCACAAACACGGTTGCTGTTCTGCACTACTGGAGTTTTGCTTAGAAGACTGgtatgccttagaatattttgcatattcatatattgagatgtcttgaccacatttcttggtgagaagcctttccact--gagccaaaggtcctgggtttgaca-----

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 6
CATTGGTGAATCTGTGGGTTATCAGATTCGTCTAGAATCAAAGCGTTCTGATCAAACACGATTGCTATTTTGCACTACTGGTGTTTTACTCCGGCGGCTGgtaagatacaactattctactactcaactactcatcacatgtagttgaagtatgatattttaagcttctttactttgaaatgtcgaatcaattgttgaaatgcag
  |||||||| |||| ||||| |||||||| || ||| ||||||| |||| ||||||||| |||||||||||||| ||||| ||  |||| |||| |||||||  ||| |  | || |||   | |  |  ||||       ||||  | | | |||||||     |     ||||           | |    ||  |   |  
TCTTGGTGAAACTGTTGGTTACCAGATTCGCCTGGAAGCAAAGCGCTCTGCTCAAACACGTTTGCTATTTTGCACCACTGGAGTACTACTTCGGCAGCTGgta--atatattttttgtacctgtta-tttttcattggtaaaagtttcactcttatatttttgttcttcagtctttatgtctgtatcttagcgtttttagaac--