Sequence
atgc intronic sequence ATGC exonic sequenceGTGCATACAACATTCCAGTATGCAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAGAATATTATGATTCACCAGgtaatattctttctgttaagattcttcaacattaatcttgttaatggggaaagccaaaatcaacattgtaaactccaacacaatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G35610.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 7
GTGCATACAACATTCCAGTATGCAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAGAATATTATGATTCACCAGgtaat--attctttctgttaagattct--tcaacat-taatcttgttaatggggaaagccaaaatcaacat-tgtaaactccaacacaatgcag------
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GTGCACACAACATTTCAATATGCAGGCACTGAAGGAAAGCGCCACCGACTGCGAGAAGCCATGGTTTTCCGTGATCCACCAGAATACTATAATCCTCCTGgtaattagttatttctcgctctattttggttagcatgtaatttgcttcatattcttgttcaatgcatatgcacgaacacactaattccgttatgtcttgt
upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 7
GTGCATACAACATTCCAGTATGCAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAGAATATTATGATTCACCAGgtaata-ttctttctgttaagattcttcaacattaatcttgt-taatggggaaagccaaaatcaac-----attgtaaactccaacacaatgcag------
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GTGCATACTACATTCCAGTATGCTGGTACTGACGGAAAGCGTCATAGACTTCGGGAAGCGAAGGTTTTCTATGATCCACCAGAATATTATGATTCACCAGgtaattcttctagatgttatctatatcctgtagagttctattataatgcatttcatccccatgaattacttgctattagctttagtcct-tgcaaagtgcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164110256|gb|ES083345.1|ES083345EST: TATTATGATTCACCAG GAGGTTTCATTGCGTTTAAACCATCGATTCCAAAAAGCTTGTTACTTGACG
genomic: TATTATGATTCACCAGgtaatattct ... cacaatgcagGAGGTTTCATTGCGTTTAAACCATCGATTCCAAAAAGCTTGTTACTTGACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCATACAACATTCCAGTATGCAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAGAATATTATGATTCACCAGgtaatattctttctgttaagattcttcaacattaatcttgttaatggggaaagccaaaatcaacattgtaaactccaacacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG