1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCTGTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGgttaggatttgatcatgtacttgatctgttaattgcctagtgtcttagttgattacattctttctgattcttgttttcgttttcag
species | Arabidopsis thaliana |
transcript | AT2G35260.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAG ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAEST: gi|116414696|gb|EG457288.1|EG457288
genomic: CACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGgttaggattt ... tcgttttcagACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTA
EST: CACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAG ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAEST: gi|164157425|gb|ES141031.1|ES141031
genomic: CACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGgttaggattt ... tcgttttcagACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTA
EST: GCGTCTCCAAAAG ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAEST: gi|125049590|gb|EL121859.1|EL121859
genomic: GCGTCTCCAAAAGgttaggattt ... tcgttttcagACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTA
EST: CTTTCTTGCTGCGTCTCCAAAAG ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAEST: gi|116414695|gb|EG457287.1|EG457287
genomic: CTTTCTTGCTGCGTCTCCAAAAGgttaggattt ... tcgttttcagACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTA
EST: CACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAG ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAEST: gi|124945377|gb|EL021388.1|EL021388
genomic: CACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGgttaggattt ... tcgttttcagACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTA
EST: ACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTACTCCAAAAG ACCCGACATACATAGTTGCCCCGGTTTT
genomic: ACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGT-CTCCAAAAGgttaggattt ... tcgttttcagACCCGACATACATAGTTGCCCCGGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCTGTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGgttaggatttgatcatgtacttgatctgttaattgcctagtgtcttagttgattacattctttctgattcttgttttcgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC