Sequence
atgc intronic sequence ATGC exonic sequenceATTGTACAAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGgtgtgtagttagcccacacttgtttctttccaaacagtcctgcttctacctgaatctcatttttttccaagattgtgtatttgtgtgtgaattctgagaattattaagatagtttacattttccttgttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G35190.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G35190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G05720.2 (Glycine max), 5'ss of exon 4
ATTGTACAAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGgtgtgtagttagcccacacttgtttctttccaaacagtcctgcttcta---cctgaatct-catttttttccaagattgtgtatttgtgtgtgaattctgagaattattaagatagtttacattttccttgttcag
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GTAGTTCAAGACACAATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAGGCTCAGgtatgaatcttatgcctagtcccacacctcagaatcaactgagaaaaaaagcttgaatttgccatgtgaactaagggtacactcttctatgtctag----------------------------------------
upper sequence: AT2G35190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G15990.1 (Glycine max), 5'ss of exon 7
ATTGTACAAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGgtgtgtagttagcccacacttgtttctttccaaacagtcctgcttctacctgaatctcatttttttccaagattgtgtatttgtgtgtgaattctgagaattattaagatagtttacattttccttgttcag
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GTAGTTCAAGACACCATAAATGTTGGTACAGATACTGCAGCAGCTCTTAAGGCTCAGgtatgaa-----------------tctt-------aagcctagtcccac----accccagaattaattgagaaaaaaagcttgagtttg--ccatgggaacta-----agggttcac-tcttctatgtctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125275576|gb|EL289661.1|EL289661EST: AAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAG ACCGGGCAAATGAGTAGAGTTGTCAATGAG
genomic: AAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGgtgtgtagtt ... ccttgttcagACCGAGCAAATGAGTAGAGTTGTCAATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTACAAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGgtgtgtagttagcccacacttgtttctttccaaacagtcctgcttctacctgaatctcatttttttccaagattgtgtatttgtgtgtgaattctgagaattattaagatagtttacattttccttgttcag
- - - AAGAAA
- - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTC