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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCAAGTCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAATGTTGTAATGGGTAACAAGgtactcacttgacagtagaagctaagacatgattaaatatgctttttggcgattgtgctgcaatttggatatgaagatcaccattggcttcatgttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G34630.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G18160.1 (Glycine max), 5'ss of exon 8
GTCGCAAGTCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAATGTTGTAATGGGTAACAAGgta---ctcacttgacagtagaagctaagacatgattaaatatgctttttggcgattgtgctgcaatttggatatgaagatcaccattggcttcatgttgtag---------------------------------------
|| ||||| || || || ||||| || ||||||||||| ||||| || |||||| ||||||| || ||| |||||||||| || ||||||   || |  |     |           ||| ||  | |     | ||    |||||   |  || |  |  | |     ||  |    |    | ||||                                        
GTGGCAAGCCTTCTTCATGATGACGTATTGGATGATGCGGATACCAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctaaagttgtgtttcgtttgcctgcataatatacttcatctgttcattattgtttggttatatttacttaatacatactgtcacatggtgggtgtaccttgcttgaggtttttatttttttctttaaaaaatgcag

upper sequence: AT2G34630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G21570.1 (Glycine max), 5'ss of exon 6
GTCGCAAGTCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAATGTTGTAATGGGTAACAAGgtactcacttgacagtagaagctaagacatgattaaatatgctttttggcgattgtgctgcaatttggatatgaagatcaccat----tggcttcatgttgtag--------------------------
|| ||||| || || |||||||||||  |||||||||| ||| | || |||||| ||||||| || ||| |||||||||| || ||||||           ||      |  | |   ||   || || |  ||   | ||| | |  | ||     ||  | |    ||     ||| | ||  |||                             
GTGGCAAGCCTTCTTCACGATGATGTACTGGATGATGCAGATTCTAGACGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGgtatatctgaagttgtgtttcgtttgcctatatgtcatctgttcatttttgtttg-gttatatttacttaatacatactgtcacatggtgggtgcaccttgcttgaggttttttttattcaaaaatgcag

upper sequence: AT2G34630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv15s0024g00850.t01 (Vitis vinifera), 5'ss of exon 6
GTCGCAAGTCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAATGTTGTAATGGGTAACAAGgtactcacttgacagtagaagctaaga-catgattaaatatgctttttggcgattgtgctgcaatttggatatgaagatcaccattggcttcatgttgtag
|| || || || || || |||||||||||||||||||| || || || |||||| ||||||| |||||| || | ||||| || ||||||||  | |     ||    ||  ||   | |||        || ||  | ||      |   ||        || ||  |   ||  ||       |  
GTGGCTAGCCTTCTTCATGATGATGTCTTGGATGATGCTGAAACGAGACGTGGTATTGGTTCATTAAATATTATGATGGGCAATAAGgtacttgcattttcttactctctgggaatcttattttcctcctttcttttctatgaatacgtttttcccccccaaatat-gcttctgctttttaacaattt