1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGgtgcgatgattctatctcgaatgtgtttttacttttgaactcttactctcttttgcatttcaattcatatgcacaccaaaccattaactaatttcttgagcctagctcaattagatcttgtaaagtttattttcttgatgcataacagtcttattcgtcttgtgcag
species | Arabidopsis thaliana |
transcript | AT2G34560.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAG ACTATGCTTGCAAAGGCTGTTGCTACAGAGTGEST: gi|163982083|gb|ES156753.1|ES156753
genomic: TAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGgtgcgatgat ... tcttgtgcagACTATGCTTGCAAAGGCTGTTGCTACAGAGTG
EST: AACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTTGGTACCGGAAAG ACTATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACEST: gi|163991033|gb|ES146261.1|ES146261
genomic: AACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCC-TGGTACCGGAAAGgtgcgatgat ... tcttgtgcagACTATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAAC
EST: TAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAG ACTATGCTTGCAAAGGC
genomic: TAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGgtgcgatgat ... tcttgtgcagACTATGCTTGCAAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGgtgcgatgattctatctcgaatgtgtttttacttttgaactcttactctcttttgcatttcaattcatatgcacaccaaaccattaactaatttcttgagcctagctcaattagatcttgtaaagtttattttcttgatgcataacagtcttattcgtcttgtgcag
- - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - AAGGAA