1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGGgtatgtttccaacacagtttgttattttaaggttgtttctgcctacgctttatctcatctgataatattttaacatatccatatgatatgactttgcaaatatggtgtcag
species | Arabidopsis thaliana |
transcript | AT2G33640.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGG CTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGTGEST: gi|116400822|gb|EG443414.1|EG443414
genomic: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGGgtatgtttcc ... atggtgtcagCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGTG
EST: AGAAAAACTACATCAGCTTTGTG-GTCTTATGGCAGCAAGCTTCTTTTGG CTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTATCGTGEST: gi|116401153|gb|EG443745.1|EG443745
genomic: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGGgtatgtttcc ... atggtgtcagCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGTG
EST: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGA CTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGAGEST: gi|116400801|gb|EG443393.1|EG443393
genomic: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGGgtatgtttcc ... atggtgtcagCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGTG
EST: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGG CTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGTG
genomic: AGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGGgtatgtttcc ... atggtgtcagCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATTTGTTCGATGTTTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTTATGGCAGCAAGCTTCTTTTGGgtatgtttccaacacagtttgttattttaaggttgtttctgcctacgctttatctcatctgataatattttaacatatccatatgatatgactttgcaaatatggtgtcag
- - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT