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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGAAACAAGTAGATTCATAGACAAATATGACGTTACTCTTGACGTCTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAAgtaagttcagaaaccaataaaagtgttaaacacttttgtttttgttttttttaattttcttctgctgatttcttggaatgatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G33530.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194730|gb|EL209684.1|EL209684
EST:     GCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAA                         CAAGTGGGAGAGACGGTGG
genomic: GCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAAgtaagttcag ... aatgatgtagCAAGTGGGAGAGACGGTGG
EST: gi|125157723|gb|EL186659.1|EL186659
EST:     GCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAA                         CAAGTGGGAGAGACGGTGGATGTG
genomic: GCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAAgtaagttcag ... aatgatgtagCAAGTGGGAGAGACGGTGGATGTG