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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattcccaccttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G33210.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G416120_T01 (Zea mays), 5'ss of exon 6
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggat--tcccaccttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcag--------------------
||| ||| | | ||||||||| |||||||| |||||||||||  ||||||| || |||||||| ||||||||||| || ||| | ||| | || |||||||||||     |      |||     |  || || |      ||| |   ||   |||     ||   ||   | |   ||                    
CAACACCCTTTATAATGAGCTTGAAGTTGTGGAGGGTATGAAACTTGACAGAGGTTACATCTCTCCGTACTTCATTACCAACTCAAAAGCCCAGAAATGTgtaagtgccatttatttttgcctggtagtctatatgtttctttgagacctttggttgtatacaacacatgaatatcttagttgtactttttgtatcgcag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G458208_T01 (Zea mays), 5'ss of exon 6
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattccc-accttgttactttat-caatttaaggaattgcgg---atttaatt---tgctctgaatgaatatgt--gttgcag--------------
 || ||| | | ||||||||| |||||||| |||||||||||  | ||||| || |||||||| ||||||||||| || ||| | ||||| || |||||||||||  | |   |  ||   |  |||| | || || |   ||  |    ||||  ||   | | |   | |||||| |  |||                  
TAACACCCTTTATAATGAGCTTGAAGTTGTGGAGGGTATGAAACTAGACAGAGGTTACATCTCTCCGTACTTCATTACCAACTCAAAAACCCAGAAATGTgtaagtgtcctttattttagcatgttattctatatatgtttttttgagacatttggttatgtaccccacaagaatatcttagttattctttttgcctcacag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 7
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattcccaccttgt----tactttatca-atttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcag--------------------------------------------------------------
|||||| ||||  |||||| ||||||| ||||| || |||||| | |||||||||||||| || || || |||||||| |||| ||| |  || ||||||||| |   || |    | |    ||||| |    |||  |    || | |  | |   |     ||||  |  |   |                                                                   
CAAGACATTGTACAATGAGTTGGAAGTCGTTGAAGGAATGAAGCTCGACAGGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctcactttatatctcctacttcacagcattagaaatctttctggataatactatctggaatttaccttgatcatgagtcctttttatttttgtttctgatatgttatgtgtaaccatgtactgtctttgtgccaacag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 7
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattcccac----cttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcag--------------------------------------------------------------
 ||||| ||||  |||||| |||||||||| || || |||||| | |||||||||||||| || || || |||||||| |||| ||| |  || ||||||||| |   || |        |  ||||| |   |||  |    || | |  | |   |     ||||  |  |  || |                                                                 
TAAGACATTGTACAATGAGTTGGAAGTTGTGGAAGGAATGAAGCTCGACAGGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctcactttacatctcctacttcaatcattagaaatctttctggataatactatctagaatttaccttggtagtgagtcctttttatgttaatttctgatatattatgtgtaaccatgtaatgactttgtgccaacag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 7
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattccca-ccttgttactttatcaatttaaggaattgcggatttaatttgctc-tgaatgaatatgtgttgcag-----------------------------------------------------------------------------------
 ||||| |||| ||||||  |||||||||||||||| |||||| | || || || ||||| ||||| || || ||||| |||| |||||| ||||||||||||||  ||     |||||| |||   |  ||| |   |  |  ||||    ||   || | | ||||    | |   ||                                                                                   
GAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGATAGAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttcataattgaagtaatatgaaagaagcttatgtttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S52_245V6.1 (Physcomitrella patens), 5'ss of exon 7
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattcccaccttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcag-------------------------
 || || ||||| |||||  |||| |||||||||||||||||| | ||||| ||||| || ||||| |||||||| || ||  |||| ||||| |||   ||  | ||    | |      | || |  |||      ||  |   | |   |   |      |  | |||| ||                            
AAAAACTTTGTTCAATGAATTGGAGGTTGTTGAGGGTATGAAGCTCGACAGAGGATATATTTCCCCTTACTTCATTACCAATGCGAAGACACAGAAAGTGgtgtgtatctaaatcaaaacgccttgt--attctgattatgtctattctcgctcattgcttg-gggtctgtgctgataactacctacatttgactctacaaag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S149_289V6.1 (Physcomitrella patens), 5'ss of exon 7
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattcccaccttgttactt--tatcaattta--------aggaattgcgg---atttaatttgctctgaatgaatatgtgttgcag--------------------------------------------------------------------------------------------
 ||||| || ||||||||| |||| ||||| ||||| |||||| ||||||||||||| || ||||| || ||||| |||||  | || || || |||   ||  | | |   |      | | |  | |  || ||          | | |||     || |   ||||| |  || |||   ||||  |                                                                                             
AAAGACTTTATTTAATGAGTTGGAGGTTGTGGAGGGCATGAAGCTTGACAGGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtacttgaattagaatgcctcgtgttgatctactctatatgtgtactgcaaccaatgtttcttgctttccatcaatcactgtttaattttaaatctgcgtgtgtctgttaagcttttttggatttagatgagcctgaacttcattttaacttagcttggcttgtttgacaatgaaacag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S378_9V6.2 (Physcomitrella patens), 5'ss of exon 7
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAAT------GTgtaaggattcccac------cttgttactttat--caatttaaggaattgcggatttaatttgctctga-atgaatatgtgttgcag----------------------------------------------------------------------------------------------------
 || ||  ||||||||||| |||| ||||| |||||||||||| | ||||| ||||| ||||| || || ||||| || ||  | || || ||||||       || | |  ||    |       |||| ||||| |    | |    | | ||| |   |  ||   || ||  ||  ||  ||  |  ||                                                                                                    
AAAAACTCTGTTTAATGAGTTGGAGGTTGTGGAGGGTATGAAGCTCGACAGAGGATATATCTCTCCCTATTTCATCACCAATTCTAAGACTCAAAAAGTGgttggtattaaaatcattatattttgcttgctacttcacggtagtcactgcagttgtgttatccatgctctttgttattcattcgtcattgagtgttctttttattcgtgcttttgattttttttgtctttctggatttagaagagcccacacttatatttgacgtcgtgttggtcgtttaccaatgatacag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ32351 (Selaginella moellendorffii), 5'ss of exon 5
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattcccaccttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcag
||||||||||   || ||||| || ||||| |||||||||||| | |||||||||||||| ||||| || ||||| |  ||| | || ||||| ||||| |||| |  |||    ||| |  | ||| |   ||  | |    |   ||    ||  | |                  
CAAGACCTTGCACAACGAGCTAGAGGTTGTGGAGGGTATGAAGTTGGACAGGGGATACATTTCCCCCTATTTCATTAACAACGCTAAGACACAGAAATGCgtaatg--tcctcgtttgcttgtgtatta--ctagcgtaacaagtgctt---ctgtgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483327|gb|EG525919.1|EG525919
EST:     GGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGT                         GAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATA
genomic: GGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattc ... tgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATA