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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAGTTCAGATATTGGCCCAATAACAATAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCTACAGGCTGGTGATACAGgtacttttaatatagttcatgtcttagctaaagcttcaagcatttgctggttttaacatcaaattttcatgaaccattttctaaaactattgttggttttctgtgtttttcacctctacag

Basic information

species Arabidopsis thaliana
transcript AT2G30470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G40280.1 (Glycine max), 5'ss of exon 5
TTCCAGTTCAGATATTGGCCCAATAACAATAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCTACAGGCTGGTGATACAGgtacttttaatatagttcatgtcttagctaaagcttcaagcatttgctggttttaacatcaaattttcatgaaccattttctaaaactattgttggttttctgtgtttttcacctctacag
|| |||||||||| |||||| ||||||||||||||||||||||| || || || || || || ||||| ||| |||||    || | ||||||||||| ||||       || | | |||  ||| || |    || | |||  | ||  ||| |  ||||  || | |  |   ||||      | |||| |   |||| ||    | | | ||      
TTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGAATGTATGTATTGGAGGGAGTAACCCCTTGCATGCAGGCCATGCAATTAAATGCTGGTGATACTGgta-------taca-tccat--cttggcaatgaattgatgcacatacttatttcattatcat-ttgttaaaatttattt------agtattctgatttttgtgaaaatgttatctaa----

upper sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 3
---------TTCCAGTTCAGATATTGGCCCAATAACAATAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCTACAGGCTGGTGATACAGgtacttttaatatagttcatgtcttagctaaagcttcaagcatttgctggttttaacatcaaattttcatgaaccattttctaaaactattgttggttttctgtgtttttcacctctacag
         || |||||||||| |||||| |||||||||||||| |||||||| || || || || || || ||||||||| |||||    || | ||||||||||  ||||    |   ||  |  |  | ||| |||||  | |  |  |||  |  |  ||   ||| |  |      | | || |  ||   ||   |||                          
GACTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGAGTAACCCCTTGCATACAGGCCATGCAATTAAATGCTGgtgatattggtatacatc-catcttgaaaatgttatctaaa-ttacttgagttttatactcatag--tcatacataggcagatcgttatagaattttagaattg--------------------------

upper sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
TTCCAGTTCAGATATTGGCCCAATAACAATAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCTACAGGCTGGTGATACAGgtacttttaatatagttcatgtcttagctaaagcttcaagcatttgctggttttaacatcaaattttcatgaaccattttctaaaactattgttggttttctgtgtttttcacctctacag
|| || ||||||| |||||||||||| || ||  | ||||||||||||||||| || || || |||||||||||||||    |||  ||||||||||| ||||  ||| || |  ||| | ||| ||     |    |  ||||  |    ||| | ||  |  |||     |  ||||| ||  | |||  |||  |  |                    
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattc-tttctcagt--gggtggtatacattacccatctttgatatacatgtttttcatagtattttgtatgattatgcttgtgtaacaa------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125314208|gb|EL328293.1|EL328293
EST:     AGGCTGGTGATACAG                         TAACTTTCAGTCGGGTTGATCCTGGCGGAAAACTAAATCATGGGTTCCAGG
genomic: AGGCTGGTGATACAGgtacttttaa ... acctctacagTAACTTTCAGTCGGGTTGATCCTGGCGGAAAACT-AATCATGGGTTCCAGG