1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgtcttccatgaatcttttgcattctagacttgtataaaatcattttcacattcctttatgtggtatactgttacag
species | Arabidopsis thaliana |
transcript | AT2G30200.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCEST: gi|116380443|gb|EG423035.1|EG423035
genomic: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
EST: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCEST: gi|86080301|gb|DR376058.1|DR376058
genomic: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
EST: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCEST: gi|116401255|gb|EG443847.1|EG443847
genomic: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
EST: AATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCEST: gi|116380445|gb|EG423037.1|EG423037
genomic: AATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
EST: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCEST: gi|86074247|gb|DR370004.1|DR370004
genomic: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTC
EST: AAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCEST: gi|116380442|gb|EG423034.1|EG423034
genomic: AAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
EST: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCEST: gi|116377112|gb|EG419704.1|EG419704
genomic: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
EST: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCG GGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
genomic: AAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgt ... actgttacagGGTAATTACGCAGTATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAAGAAGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGgtatatatgtcttccatgaatcttttgcattctagacttgtataaaatcattttcacattcctttatgtggtatactgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA