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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATCATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCgtgagtgatcatttcattacattatattgagatttaatacatagtgttactagaaaaggtgattaataattagggattgtttaattgattaatgacag

Basic information

species Arabidopsis thaliana
transcript AT2G29980.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G29980.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 8
TAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATCATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCgtgagtgatcatttcattacattatattgagatttaat-acatagtgttactagaaaaggtgattaataattagggattgtttaattgattaatgacag---------
| | || || ||    ||||||||||| || || |||||||| || || || || |||||||||||||| |||||||| |||||||||||  | || || ||  |   ||  || || | | || |   |     |||   | | |  |       ||  |   |  |||      | | | ||| || || ||              
TCGTGACTATGGCTGGTTTAACAACATCCACCATGACATTGGCACCCATGTTATACATCATCTCTTCCCTCAAATCCCACACTATCACTTAATAGAAGCGgtacgacctccattgatgaaaata-accaatccccaattggaaaatcctgaggattaaactccatgttaagagcttactctctaactgtttgatattcctgcttgcag

upper sequence: AT2G29980.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S98_209V6.1 (Physcomitrella patens), 5'ss of exon 6
TAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATCATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCgtgagtgatcatttcattacattatattgagatttaatacatagtgttactagaaaag--gtgattaataattagggattgtttaattgattaatgacag----------------------------
 || ||||| ||||||||||||||||| |||||||||||||| || || ||| | || ||  | || || || || |||||||| ||  || |||| || || |||  |    |  ||     ||  |  ||   |||     ||  |     || ||  |||   | ||  ||||   || | |   | |     |  |                            
CAGGGATTATGGAATCTTTAACAACATCCATCACGACATTGGTACCCATGTGGTGCACCACTTGTTTCCTCAGATTCCTCACTACCATCTGATCGAAGCGgtaagttgt--gctagttgagcaattgtcggacgaaatgttgggtactgtgttaagagttgtggacattatgtaggtgatggtgacggggtatgccatggaggctgaggtgcaatactgtctgtgcag

upper sequence: AT2G29980.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S69_223V6.1 (Physcomitrella patens), 5'ss of exon 6
TAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATCATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCgtgag---tgatcatttcattacattatattgagatttaata--catagtgttactagaaaaggtg--attaataattagggattgtttaattgattaatgacag-------------------------------------
||| |||||||| ||||||||||||||||||||||||||||| || || ||  | || ||  | || || || || ||||| || ||| || | || || || ||   || |  || || ||  |  |     || ||   |    |  || |  | ||    |||  |||| |  | | | ||      |||   || |   ||                                     
TAGGGATTACGGGATCTTTAACAACATTCATCACGACATTGGTACCCATGTTGTGCACCACTTGTTTCCCCAGATTCCTCATTACCACCTGATTGAGGCGgtaagacctgctatttacagtaactcgttcccggaattgtcaattgttctggtgttggacggcgtgtaattagtggt-atgaatgacgagattttctactttgagtctacggtcaacgaagcacatctgtggtcttttgcag