Sequence
atgc intronic sequence ATGC exonic sequenceACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCATgtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G29070.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G29070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G04140.1 (Glycine max), 5'ss of exon 7
ACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCATgtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcag
|| || | |||| || || | || | | | |||||| || || | ||||||||||||||||| | ||||| |||||||| ||||| |||||||||||||| ||| || | || | | | | | || | || | | | | | |||| | || | |||||||
ACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATgttagtatttctttt-ctaatatctagttatacctttaacagtgtcaattgatattttctttcattctcttgattatttgcag
upper sequence: AT2G29070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G41280.1 (Glycine max), 5'ss of exon 8
ACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTT-GGATATTTCCAACCCAAAAGCCATgtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcag-------
| || | |||| || | | || | | | |||||| || || | ||||||||||||||||| | ||||| || |||||| ||||| |||||||||||||| ||| || | | || | | | |||| || | | | | | |||| | || | |||||||
-CATTGTAAAAGTGAAAATTGCCACCCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTTGGATATCTCCAATCCAAAAGCCATgttagtatttcttctataatatc-tagttacacctttgacagtgtcaattgatattttctttcattctcttgattatttgcagcttagagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072862|gb|DR368619.1|DR368619EST: CTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCAT CTTGGAGACTACGCTTNNNAGTTACTCTTGCTTAACCACGGGTGATACAAT
genomic: CTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCATgtttgtagtt ... tcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCATgtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG