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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaattaatcactcttttaccattttcttgaaaactttgatttaagcttattggctgattagttattacttctattgtctggccattgtag

Basic information

species Arabidopsis thaliana
transcript AT2G28760.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 9
GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaattaatcactcttttac---cattttcttgaaaactttgatttaagcttattggctgattagttattacttctattgtctggccattgtag------------------------
| ||| | || || |||||||| || ||||| || ||||||||  | |||||||||||||||||||| ||||||||||||||  |       |||||| |    | ||||||   |  |||  ||||  | |||    |    | ||||  |||   || |     | |||| |                        
GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGTTTGATTACCATAGGCAGCATGGGATTGgtaatttcttgtcttcttttccttgtaatttcttctca--ttttgtttacacatatccagtagagatttat--ctttgtttcttaactccttgtggtgtttatgtctcctttcaacatag

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 9
GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaat-taatcactcttttaccatt-ttcttgaaaactttgatttaagcttattggctgattagttattacttctattgtctggccattgtag------------------------
| ||| | || || |||||||| || ||||| || || |||||  | |||||||||||||||||||| ||||| ||||||||  | |  ||  | |||    ||  ||  |      |||| || | || |||    |    || | || |||   || |     | |||  |                        
GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGTTTGATTACCATAGGCAGCATGGAATTGgtaatttattgtctttttttccttataatttcttctcgttttgtttaaggcatatccaatag--agatttttctttgttttttaactccttgaggtgtttatatatcctttcaacatag

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 8
GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaat-taatcactcttttaccattttcttgaaaactttgatttaagcttattggctgattagttattacttctattgtctggccattg--tag----------------------------------------------
| ||| | || ||||||||||| || || |||||||| || ||| | ||||||||||| |||||||| ||||| || |||||    | |||  | ||||  | ||||||      |      | |   | ||||   |   |   | |||   | |||    ||  ||   ||                                               
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATCGgtaattccttatctttattttttccttttctccttggcaacatctca--ttgattgagggcacaaacagtacacgttttgcactgctgttaactaataagcaataactcaatgtgatgcttattttcatatttttctctcag

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaattaatcactcttttaccattttcttgaaaactttgatttaagctta---ttggctgattagttattacttctattgtctggccattgtag
||||  | ||||| |||||||| || || ||||| || |||||| | ||||||||||| ||||||||||||||||| |||||  ||  |   | ||||   | |       ||||||  ||  |     |   ||      |  ||| || ||| |||  | ||| ||      
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctt-tatattttggacag-----

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaattaatcactcttttaccattttcttgaaa-actttgatttaagcttattggctgattagttat-tacttctattgtctggccattgtag-----
| || |||||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| |||||  |||||| |   | ||    | ||     |||  | |   |    | | || |||| |  |  | |    | | ||||   |  ||       ||  |      
GAGTAAGAAGCTGCTATGACGAGGGAAAGCGTGTTGCTGAGACTCTTATGTTTGACTACCATAGGCAGCATGGCGTTGgtatatacattcctcgtgttgtatcttttctaagttaacacgctctacgcttttatgtcggtccaatgtgtactagaagcgtaaaatatttaaacctggc