1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTCTACGTCGTGAGCCTCTCAAGCTTGTAGATGGTGGAGAATCACAGAGAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTgtacgttccattgcctgatatatagctttttgtttacaaactgttaatgttagaagttcgaagtagtttcaactaaaacctataatgacattgtatgtttgtggttcag
species | Arabidopsis thaliana |
transcript | AT2G27860.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGATGCTATTGAAGCTGTCCTTTTTGATGATT G-AAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACEST: gi|116422972|gb|EG465564.1|EG465564
genomic: ATGATGCTATTGAAGCTGTCC-TTTTGATGATTgtacgttcca ... tgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAAC
EST: GAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATT GAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACEST: gi|124786829|gb|EH876508.1|EH876508
genomic: GAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTgtacgttcca ... tgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAAC
EST: CCTTTTGATGATT GAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACEST: gi|116380174|gb|EG422766.1|EG422766
genomic: CCTTTTGATGATTgtacgttcca ... tgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAAC
EST: GAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATT GAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACEST: gi|125273593|gb|EL287678.1|EL287678
genomic: GAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTgtacgttcca ... tgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAAC
EST: AACTTTCGTCTACTATCAATGATGCTATTGAAGCTGTCCTTTTGATGATT GAAAACCCAGAGAGGGCAAATGGGCACATEST: gi|125142397|gb|EL179719.1|EL179719
genomic: AACTTTCGTCTAC-ATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTgtacgttcca ... tgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACAT
EST: ATGATGCTATTGAAGCTGTCCTTTTTGATGATT GAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAAC
genomic: ATGATGCTATTGAAGCTGTCC-TTTTGATGATTgtacgttcca ... tgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTACGTCGTGAGCCTCTCAAGCTTGTAGATGGTGGAGAATCACAGAGAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTgtacgttccattgcctgatatatagctttttgtttacaaactgttaatgttagaagttcgaagtagtttcaactaaaacctataatgacattgtatgtttgtggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG