1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTTTGCTGTGTTATCTTGGTGGAGAGATTGAAACCTATAATGGATCAGATGATGATGGAGAAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAAgtaggtagcctagtaaattctgatagttactcttctataacaaagattctgcatgaataaccgtaacgtttgcatttttctttgatcag
species | Arabidopsis thaliana |
transcript | AT2G27150.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAA GCGTATGGTCAGTATATTAATTTATCGGCGAGTACATTGTATAAGCCAGAGEST: gi|116387997|gb|EG430589.1|EG430589
genomic: AAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAAgtaggtagcc ... ctttgatcagGCGTATGGTCAGTATATTAATTTATCGGCGAGTACATTGTATAAGCCAGAG
EST: TGATGATGGAGAAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAA GCGTATGGTCAGTATATTAATTTATCGGCGAGTACATTGTATAAGCCAGAGEST: gi|116388029|gb|EG430621.1|EG430621
genomic: TGATGATGGAGAAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAAgtaggtagcc ... ctttgatcagGCGTATGGTCAGTATATTAATTTATCGGCGAGTACATTGTATAAGCCAGAG
EST: TGATGATGGAGAAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAA GCGTATGGTCAGTATATTAATTTATCGGCGAGTACATTGTATAAGCCAGAG
genomic: TGATGATGGAGAAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAAgtaggtagcc ... ctttgatcagGCGTATGGTCAGTATATTAATTTATCGGCGAGTACATTGTATAAGCCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGCTGTGTTATCTTGGTGGAGAGATTGAAACCTATAATGGATCAGATGATGATGGAGAAGTCAGGTTCCGTGACATGGAACATACTCATTCAACAAgtaggtagcctagtaaattctgatagttactcttctataacaaagattctgcatgaataaccgtaacgtttgcatttttctttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA