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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgtaaatgtcataagctacatggtttcttacaattttgagattctgcaattttattgctgcatactttcttctggcttttgtgactgagactcaacaacactcttgaatggatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G26990.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G132804_T01 (Zea mays), 5'ss of exon 6
AGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgta-aatgtcataagctacatggtttcttacaattttgagattc-tgcaattttattgctgcatactttcttctggcttttgtgactgagactcaacaacactcttgaatggatgcag
||||||  |||||||||| |||||||| |  |||||  | || || ||||| |||||||| || || ||||||||||| ||| | || |||||||||||||||    ||| |    | |    || |     | | |  | |   |   || |||||     || |||     | |   |  ||  ||   || || ||                   
AGATGGTTCTGATGATCAAAAGAAAGGCACACAGCTTTTGGAAGTCTATGCTATTGAAATCCAAATGTACACTGAAACAAAGAATAATAAAAAGCTTAAGgtatggcgtccttgtttgcccatttgcaagtgactctttggtgggtattatcttattaaattatccttgtgaattgtgatgatgtatgtttctgaaaaat------------------

upper sequence: AT2G26990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G079196_T01 (Zea mays), 5'ss of exon 6
AGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgtaaatgtcataagctacatggtttcttacaattttgagattctgcaattt-tattgctgcatactttcttctggcttttgtgactgagactcaacaacactcttgaatggatgcag
||||||  |||||||||| |||||||| |  || ||  | || || ||||| |||||||| || || ||||||||||| ||| | || ||||||||||||||||  | |||    |   ||  |  |  ||| |    || |||    |   || |    ||   |   || |   | |    | |  ||  ||  |   || ||   |        
AGATGGTTCTGATGATCAAAAGAAAGGCACACAACTTTTGGAAGTCTATGCTATTGAAATACAAATGTACACTGAAACAAAGAATAATAAAAAGCTTAAGgtaa--gacatcc-ttgtttgcctattcgcaagt----gactctttggtgggtaatatcccaagttaaattatcattgtga--attatgatgcattatttctttttttt--------

upper sequence: AT2G26990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S105_216V6.1 (Physcomitrella patens), 5'ss of exon 6
AGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgtaaatgtcataagctacatggtttcttacaattttgagat------tctgcaat----tttattg---ctgcatactttcttctggcttttgtgactgagactcaacaacactcttgaatggatgcag-------------------------------------------------------------
|||||| || ||||| |||||||| || |  |||||||| || |||||||| |||||||||||||| || || || || ||| |||||||||| |||||||| | |     |||  | |   |   ||  |||| || ||       ||||| |     | || ||   ||  | |  ||  |    | ||  ||||   |   ||| |  |      | | | |   |                                                             
AGATGGCACAGATGACCAGAAGAAGGGCACGCAGCTGCTGGAAGTTTATGCGATTGAAATTCAGATGTATACAGAGACTAAGAACAACAAAAAACTTAAGgttagttc---aagtgaaaccttcaattgaaattctgtgacctaagctctgctaccagatctagtggaactaaaaaaattaattattcattcttgacattgtagcaataggatctcgaagtcgttagtgttggaatctcgtatattggtataagagttagtatttattctttttagcgtgaaccttgcag

upper sequence: AT2G26990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ29478 (Selaginella moellendorffii), 5'ss of exon 6
AGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgtaaatgtcataagctacatggtttcttacaattttgagattctgcaattttattgctgcatactttcttctggcttttgtgactgagactcaacaacactcttgaatggatgcag
||||||  ||||||||||||||||||||| |||||| || || || || || ||||| |||||||| ||||| || || ||| ||||||| ||||| ||||||           |||    |||  ||    || ||| ||| |||         ||  ||                                                       
AGATGGCTCTGATGATCAGAAGAAAGGAACTCAGCTTCTGGAAGTATACGCCATTGAGATTCAGATGTACACGGAGACAAAGAACAACAAGAAGCTAAAGgtat----------ctatgcagttcttt----ttatgatattttgctgaacctcggcctcag------------------------------------------------------

upper sequence: AT2G26990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ28052 (Selaginella moellendorffii), 5'ss of exon 6
AGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgtaaatgtcataagctacatggtttcttacaattttgagattctgcaattttattgctgcatactttcttctggcttttgtgactgagactcaacaacactcttgaatggatgcag
||||||  ||||||||||||||||||||| |||||| || || || || || ||||| |||||||| ||||| || || ||| ||||||| ||||| ||||||           |||    |||| ||    || ||| ||||| |         ||  ||                                                       
AGATGGCTCTGATGATCAGAAGAAAGGAACTCAGCTTCTGGAAGTATACGCCATTGAGATTCAGATGTACACGGAGACAAAGAACAACAAGAAGCTAAAGgtat----------ctatgcagtttttt----ttatgatattctactgaacctcggcctcag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86049784|gb|DR345539.1|DR345539
EST:     CAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAG                         CAACTATACCATAAGGCACTTGCCATCAAGTCTGCCATACCTCATCCTAGG
genomic: CAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGgtaaatgtca ... atggatgcagCAACTATACCATAAGGCACTTGCCATCAAGTCTGCCATACCTCATCCTAGG