1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtctctaaatgtttgctcttccgattagtttgggctgattcatctggaaatctgtattggtttctgttgctaaaaagctttagtttgttttgcatgcacaagacacttttttgctgatgaaaaatctataactatttggtctgagtttcattaaatcgacttaatttag
species | Arabidopsis thaliana |
transcript | AT2G24765.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGACAG GATCTTCCCGGTGCACTCGATGEST: gi|125202588|gb|EL217542.1|EL217542
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAG-CAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATG
EST: CAAACAAGCAG GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGEST: gi|125024866|gb|EL097135.1|EL097135
genomic: CAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: TGATATTTGCAAACAAGCAG GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGEST: gi|125220940|gb|EL235025.1|EL235025
genomic: TGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG GATCTTCCCGGTGCACTCGAEST: gi|164054747|gb|ES009190.1|ES009190
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGA
EST: AGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACNGAAGCCTTGGEST: gi|125024221|gb|EL096490.1|EL096490
genomic: AGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGG
EST: AATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGEST: gi|19877752|gb|AU238583.1|AU238583
genomic: AATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGEST: gi|164172241|gb|ES066658.1|ES066658
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG GATCTTCCCGGTGCAC
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtctctaaatgtttgctcttccgattagtttgggctgattcatctggaaatctgtattggtttctgttgctaaaaagctttagtttgttttgcatgcacaagacacttttttgctgatgaaaaatctataactatttggtctgagtttcattaaatcgacttaatttag
AAGATG