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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGACAAAGCATGAAGCCACCACAAAGGCTAAGGAACTGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAGgtgagattaatagattttatcttttacgactttcttgcatcatagattttctcaattaacttggacacttcctggactcag

Basic information

species Arabidopsis thaliana
transcript AT2G24420.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125037513|gb|EL109782.1|EL109782
EST:     CTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAG                         ACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAA
genomic: CTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAGgtgagattaa ... ctggactcagACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAA
EST: gi|163981902|gb|ES056878.1|ES056878
EST:     TGGGGCGTGGCTTCCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAG                         ACTGTTGCTGGGACAC
genomic: TGGGGCGTGGCTTCCCCC-TTGGTTTGCTGTACACTGGAGTAGTTTTCAGgtgagattaa ... ctggactcagACTGTTGCTGGGACAC
EST: gi|164102576|gb|ES031433.1|ES031433
EST:     ATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAG                         ACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAA
genomic: ATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAGgtgagattaa ... ctggactcagACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAA
EST: gi|124883304|gb|EH962206.1|EH962206
EST:     AT-GGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAG                         ACTGTTGCTGGGA
genomic: ATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAGgtgagattaa ... ctggactcagACTGTTGCTGGGA