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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCTCAATTGAGCTCATGAAATTCGACATGGGCGGTTCAGCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttctcccatcagattcttttgaaagctatagtttgttaaccgaactgaacagattcgtcttccacaaccag

Basic information

species Arabidopsis thaliana
transcript AT2G24200.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24200.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G36530.1 (Glycine max), 5'ss of exon 5
TGGCTGCTCAATTGAGCTCATGAAATTCGACATGGGCGGTTCAGCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttctcccatca--gatt----cttttgaaagctatagtttgttaaccgaactgaacagattcgtcttccacaaccag------------------
|||||| |||||||||||||||||||| || ||||| |||||||| || ||| | ||  | || |||||| | ||| | || || |||| ||| || ||||| |||   |    |||  | |     |||||       ||||  | | |   |   |||   |||| |  ||    | ||                    
TGGCTGTTCAATTGAGCTCATGAAATTTGATATGGGTGGTTCAGCAGCAGTTTTAGGAACAGCAAAAGCTCTCGGTCAAATCAAACCTCTTGGGGTGGAGgtcagtcatttatgtcattggtcatgactttttctttgcatagaatatcatttggtttgatt-gattagcatttggtatcctaagtctttctatctttcaa

upper sequence: AT2G24200.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G08150.1 (Glycine max), 5'ss of exon 5
TGGCTGCTCAATTGAGCTCATGAAATTCGACATGGGCGGTTCAGCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttctcccatcag-----at-tcttttgaaagctatagtttgttaaccgaactgaacagattcgtcttccacaaccag------------------
|||||| |||||||| ||||||||||| || ||||| |||||||| || ||| | ||  | ||||||||| ||||| | || || ||||  || || ||||| |||   |    |||      || ||||||       ||||  |   |   |   |||   ||||  |       | ||                    
TGGCTGTTCAATTGAACTCATGAAATTTGATATGGGTGGTTCAGCAGCAGTTTTAGGAACAGCGAAAGCTCTTGGTCAAATCAAACCTCTAGGGGTGGAGgtcagtcatttatgtcaatagtcatgtctttttctttgcatagaataacatttggtttgatt-gattgttgcatggtatcctatgtttttctatctttcaa

upper sequence: AT2G24200.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 5
TGGCTGCTCAATTGAGCTCATGAAATTCGACATGGGCGGTTCAGCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttctcccatcagattcttttgaaagctatagtttgtt---aaccgaactgaacagattcgtcttcca-caaccag---------------------------------------------------------------------------
|||||| || |||||||||||||| || || ||||| ||||||||||| ||||| || || || ||||| |||||| | ||||| ||| |||| || ||||| ||    |       | |  | ||   |    | |||||||   |   | |  |||||  ||| |     | | |   |                                                                           
TGGCTGTTCTATTGAGCTCATGAAGTTTGATATGGGGGGTTCAGCTGCGGTTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125029183|gb|EL101452.1|EL101452
EST:     GCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAG                         GTTCATTTCATCGTTGCAGCCTGTGAAAATA
genomic: GCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttct ... ccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATA
EST: gi|124771750|gb|EH861880.1|EH861880
EST:     CGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAG                         GTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG
genomic: CGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttct ... ccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG
EST: gi|116409637|gb|EG452229.1|EG452229
EST:     TTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAG                         GTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG
genomic: TTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttct ... ccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG