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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacattcctccaagttatagctaaaaatacgattctatgtatttataactatggcag

Basic information

species Arabidopsis thaliana
transcript AT2G23070.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G22320.1 (Glycine max), 5'ss of exon 6
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacattcctccaagttatagctaaa-aatacgattctatgtatttataactatggcag
|||||||| |||||||| ||||||||||| ||||| |||||||||||| |||||||||| || |||||||        |||| |      ||          | ||      | |||  |   |    || ||| || |    | |  | || ||    |     | |     
ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagg-----gaagcctgggaggtggacttgagtttgtgccatattgttatgtgtgtttgggtgataactcattgctgctttgctctggtcctggtgttgtttt--

upper sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G17520.2 (Glycine max), 5'ss of exon 6
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacattcctccaagttatagctaaaaatacgattctatgtatttataactatggcag-
|||||||| |||||||| ||||||||||| ||||| |||||||||||| |||||||||| || |||||||        |||| |      ||          | ||  |||||| |  | |  |  | |||  || | | ||  |  | ||   |   | |  |  |||    
ATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagg-----gaagcctgggaggtggacttgagtttgtgc-cagattgttaagttatgtatgtttgag-tgataactcattgctgctttgctctggccctggtgtt

upper sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S165_107V6.1 (Physcomitrella patens), 5'ss of exon 6
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacattcctc-caagttatagctaaaaatacgattctatgtatttataactatggcag
|| ||||||||||||||||| || |||||||| ||||| ||||||||| | || || ||||| |||| ||  | |       | || ||  |  |  |  |||    |    ||||  | ||  |     ||| |     |  |    | |     || | |  ||   | | 
ATTTTCCGCAAGGAGCCGTTTTTCTATGGCCACGACAATTATGATCAACTTGTGAAGATTGCAAAGgcaagctcat------tgtcctctgggttgattaccttcataagcgttttctaatctacatggattaaaatattaggttttgtacgtcacatattttgcttctgga-

upper sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgt-------aacattacaaa-----agctttca-----tcatgtctcgtc------tcctctgaacagattttac------attcctccaagttatagctaaaaatacgattcta-tgtatttataactatggcag--------
|| || || |||||||| ||||||||||| |||||||| ||||||||  | || || ||||| |||||       ||  | |   |     ||| ||||     |||   ||| |       |  ||||||  | || | |       || ||| | |  ||   ||||  | || |   | | || |  |   | |  |          
ATCTTTCGGAAGGAGCCATTCTTTTATGGACATGACAATTATGATCAGCTTGTGAAGATTGCCAAGgtgctcggaaatctcatttactatcagccttcaatcagtcactgctcattcgtaatttttctgaatcgtttctcctcctgtgtttctcaaggccatgtttaaatcttcgttctaaatctaatctttgttgttacctgaaatcag

upper sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S230_93V6.1 (Physcomitrella patens), 5'ss of exon 6
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacattcctccaagttatagctaaaaatacgattctatgtatttataactatggcag
|| ||||||||||||||||| || ||||| |||||||| ||||||||  | ||||| || || |||||||   | |||    |   |  | |  ||  ||    || |    | |||  ||  |     ||  | ||  |  |    | |  || || | |  ||  |    
ATTTTCCGCAAGGAGCCGTTTTTCTATGGTCATGACAATTATGATCAGCTTGTCAAGATCGCTAAGgtaa--gttcaatgtttagtaaaacga-tcacctttgttgcagtcttgttatctttgtatgttttgaaactgtagctctagtgcggtgcatattttgcttcga---

upper sequence: AT2G23070.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattacaaaagctttcatcatgtctcgtctcctctgaacagattttacatt-cctccaagttata--gctaaaaatacgattctatgtatttataactatggcag-----------------------------------------
||||| || |||||||| ||||||||||| |||||||| ||||||||| | || || ||||| |||||    |  ||      ||||| |  |    |  |||   | ||| || || ||  | |   | ||||   |   ||||    ||  ||  | | | |  | | | ||                                          
ATATTTCGGAAGGAGCCATTCTTTTATGGGCATGACAATTATGATCAACTTGTGAAGATTGCTAAGgtgcagtggcag-----ttcat-acatagatttgccttcaagcag-ttatatatcactttttatttattttgtataaaaagtcatattac-tgtctttcgcaacgccaagttgtgttttgagccttatctttgtgggtgtctgataccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164038677|gb|ES207984.1|ES207984
EST:     CTTTTATGGCCATGACAACTATGATCTAATTGGTCAAAATTGCGTAAG                         GTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGA
genomic: CTTTTATGGCCATGACAACTATGATC-AATTGGTCAAAATTGCG-AAGgtaacattac ... actatggcagGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGA
EST: gi|86088019|gb|DR383778.1|DR383778
EST:     CGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAG                         GTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
genomic: CGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattac ... actatggcagGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
EST: gi|164016771|gb|ES213025.1|ES213025
EST:     CTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAG                         GTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
genomic: CTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattac ... actatggcagGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
EST: gi|47831931|gb|CK121615.1|CK121615
EST:     CGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAG                         GTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
genomic: CGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattac ... actatggcagGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
EST: gi|125229340|gb|EL243425.1|EL243425
EST:     TTTATGGCCATGACAACTATGATCAATTGGTCAAAA-TGCGAAG                         GTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG
genomic: TTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGgtaacattac ... actatggcagGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAG