1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGTCATTGATGTCAAgtatgtgaaccttgacccacccttatttgatctgttctatcgaaagctgcacgtttttttgtttttgcttatgttcaaaatggtctgcacttttttatag
species | Arabidopsis thaliana |
transcript | AT2G21520.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGTCATTGATGTCAA CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGEST: gi|124977678|gb|EL050972.1|EL050972
genomic: TTGAAGTCATTGATGTCAAgtatgtgaac ... ttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
EST: CAAATTGCTTGAAGTCATTGATGTCAA CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGEST: gi|86064746|gb|DR360503.1|DR360503
genomic: CAAATTGCTTGAAGTCATTGATGTCAAgtatgtgaac ... ttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
EST: GTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGGCATTGATGTCAA CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
genomic: GTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGTCATTGATGTCAAgtatgtgaac ... ttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGTCATTGATGTCAAgtatgtgaaccttgacccacccttatttgatctgttctatcgaaagctgcacgtttttttgtttttgcttatgttcaaaatggtctgcacttttttatag
- - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - TTGAAG