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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATgtgagtccgacttatttctaccctcttgtatttgagccctcatatactttcccacatcatgttgtttattgcttagagaatgtattattatatctaagttcttcccgttttctggctcgtagttgtttgatgtcactctttttatcttgttcccaatattctttactgataattgagtgaacgttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21270.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21270.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G34630.2 (Glycine max), 5'ss of exon 7
ACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATgtgagtccgacttatttctaccctcttgtatttgagccctcatatactttcccacatcatgttgtttattgcttagagaatgtattattatatctaagttcttcccgttttctggctcgtagttgtttgatgtcactctttttatcttgttcccaatattctttactgataattgagtgaacgttgcag
||||||| | ||| | |||||| || ||||||||||| || || |||||  ||||||||||||||| ||||||  ||||||| ||||| || ||||| ||||||||  ||| | | |  |   |  | |  |  |||  | ||||  || || ||  ||    |||| |    || | | || | |  | |  || |  | |                                                                                       
ACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagtt-gacatttattaagtttagtttgataaagctatgatat--ttacctac--caatgagtttctcttgtaaa-agtgcaattctgtcactcaaatatgttt-----------------------------------------------------------------------------------

upper sequence: AT2G21270.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G05030.1 (Glycine max), 5'ss of exon 7
ACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATgtgagtccgacttatttctaccctcttgtatttgagccctcatatactttcccacatcatgttgtttattgcttagagaatgtattattatat-ctaagttcttcccgttttctggctcgtagttgtttgatgtcactctttttatcttgttcccaatattctttactgataattgagtgaacgttgcag
||||||| | ||| | |||||| || ||||||||||| || || |||||  ||||||| ||||||| ||||||| ||||||| ||||| || ||||| ||||||||  ||| | | |  |   |  | |  |  | |  | || ||  || ||  | ||    |||| |    | ||| || ||   | | |  || | ||      ||| | ||  | ||  || ||| |||                                                         
ACATTGTTAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCTCACACAAAAGACTTCTTGGATATTTCCAATCCAAAAGCTATgtgagtt-gacatttattaagtttagtttgataaatctatgat-tatatttccctaccaatgagtttctc---ttgagtatttacattcacacactgacttgagttagttatttgatt-gtgctttttt-atgcag------------------------------------------------------

upper sequence: AT2G21270.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G00980.1 (Glycine max), 5'ss of exon 6
ACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATgtgagtccgacttatttctaccctcttgtatttgagccctcatatactttcccacatcatgt-tgtttattgcttagagaatgtattattatatctaagttcttcccgttttctggctcgtagttgtttgatgtcactctttttatcttgttcccaatattctttactgataattgagtgaacgttgcag
|||| || ||||| | |   ||  | |||||||||||||| || |||||| ||||||| |||||||  |||||  | ||||| ||||| || ||||| ||||||||      |  |  ||   | ||| ||   |      |     | |   |||| ||   |   |||| |||  | |   |||  || | |  | |                                                                                           
ACATCGTAAGAGTGAAATTCGTATCACTTCCAAAGGGAACATATGTTAAATTACAGCCACACACAAAGGACTTTTTTGATATTTCCAATCCAAAAGCTATgtgagttgtcagtgatcgtaatatattggatgaaaataagaaatagttattgaacatgataaatcaatattccttcaaaagcatatccttgttttcatgc------------------------------------------------------------------------------------------

upper sequence: AT2G21270.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 7
ACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATgtgagtccgacttatttctaccctcttgtatttg-agccctcatatactttcccacatcatgttgtttattgcttagagaatgtattattatatctaagttcttcccgttttctggctcgtagttgtttgatgtcactctttttatcttgttcccaatattctttactgataattgagtgaacgttgcag
||| ||||   || | |||||| |||||||| |||||||| || || |||||||||||||| |||||||||||| ||||||| || ||||| ||||||||||||||     ||  |  ||  || |  |  | | ||     |  ||   |  | | | |||||  | | |  ||  |   |||   |  | |    | | ||                                                                                       
ACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttg---ttgctaataatctttattgctaggagaaggtaggtaaggtgtctcttgatgttcatcaatatttt-atgctgttgcaagagaggggaatcctg--------------------------------------------------------------------------------------