1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactgtttgattcgtatttggtggtctgatctccagtaaatatcattctgagattctttctcatgcgggtttttgacacctcaagtcatggttttgcgtag
species | Arabidopsis thaliana |
transcript | AT2G20420.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG GTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTTEST: gi|116476127|gb|EG518719.1|EG518719
genomic: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactg ... ttttgcgtagGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTT
EST: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG GTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTTEST: gi|86045986|gb|DR341741.1|DR341741
genomic: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactg ... ttttgcgtagGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTT
EST: GTACCAGTATTGAAGATNTTGCTGAGAAGTTCCCTGACATGATCATCAAG GTACCAATTGATGTATTTGCAGGAATCACTGATGAEST: gi|86045998|gb|DR341753.1|DR341753
genomic: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactg ... ttttgcgtagGTACCAATTGATGTATTTGCAGGAATCACTGATGA
EST: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG GTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTTEST: gi|125240994|gb|EL255079.1|EL255079
genomic: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactg ... ttttgcgtagGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTT
EST: TACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG GTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATEST: gi|116485864|gb|EG528456.1|EG528456
genomic: TACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactg ... ttttgcgtagGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGAT
EST: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG GTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTT
genomic: GTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactg ... ttttgcgtagGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAGgttgttactgtttgattcgtatttggtggtctgatctccagtaaatatcattctgagattctttctcatgcgggtttttgacacctcaagtcatggttttgcgtag
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGT