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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G20300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G32640.1 (Glycine max), 5'ss of exon 7
CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
|| || || |||||||||||||| |||||||||||||| || |  ||||||||| | |||||||| || | |||||| ||||||||||||||  | || ||| ||||||| |  ||    ||        |     || | | | || | |   |    | || ||  |  |  |  ||||        |    |||  ||| |  ||||
CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagtc-catgtacaatttgtgtttctttgctgtcttttaa--attatttaaa--------tgtttgttaatgatattacag

upper sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G35390.1 (Glycine max), 5'ss of exon 7
CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
|| || || |||||||||||||| |||||||||||||| || |  ||||||||| | |||||||| || | |||||| ||||||||||||||  | || ||| ||||||| |  ||    ||        | |   || | | | || | |   |   || || ||  ||   ||  ||||        | |  |||  ||| |  ||||
CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcc-catgtacaatttgtgtttcttcgttatcttttaatt--catttaaa--------tgcttgttaatgatattacag

upper sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G04700.1 (Glycine max), 5'ss of exon 4
CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
|| |||||||||||||| ||||| |||||||| ||||| |  |  ||||||||| ||||||||||  | | |||||| ||||||||||| || || || ||| |    ||   |  | |   ||||   |     | | | ||  || |     ||| ||     ||| |  |||  |   |  | |  |||  |||  |||     |||
CGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTGCTTGGTTTATGAGCTTTTTCGCAATGGTAGTGTTGAGTCTCATTTGCATGgtaattggttacatatttt---ctttggttttgggtgtgtgccgcttgt-----tcaatttataatgccttgccatgtgttaaattgaattcttgttaatgatcctgcag

upper sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G19030.1 (Glycine max), 5'ss of exon 5
CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
|| |||||||||||||| ||||| |||||||| ||||| |  |  |||| |||| | |||||||| || |||||||| ||||||||||| || || || ||| |     |   |  | |   |||||  |     | | | ||| || |     ||| ||     | | |  |||  |   |  | |  ||   |||  |||     |||
CGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTACTTGGTGTATGAGCTTGTTCACAATGGTAGTGTTGAGTCTCATTTGCATGgtaattggctacatatttt---ctttttttttgggtgtgtgccagttgt-----tcaatttataattccttgccatatgttaaattgaattattgttaatgatcctgcag

upper sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
||||||||||||||||||||||| |||||||||||||| |  ||||| ||| || | |||||||| || |||||||| ||||||||||| ||||| || ||| |  |  ||  | |  ||  | || | |  |  |  |    |||| | | |   | |    ||||  | |      |||      | ||   ||  |  |    ||  
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaatttctcactgccttggtcattcatttcctgttgaa---aattgtgttctgaagtatatgttggttaa------aaagttcaccattgtagtgttgaatcccact-

upper sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S79_45V6.1 (Physcomitrella patens), 5'ss of exon 6
---CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaa-ttatatccatcacttctcg--ttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
   || || || || |||||  ||||||||||  | || |     |  || |||||  ||||||||||| ||| ||||||||| |||||||| || ||||| |||||    ||  |||   ||     |  ||     | |   |||| || |||  |   |||   |  || | |   ||  | | |    |    | ||||             
CATCGAAACCTCGTTAAACTCGTTGGAATATGTGTAGAGGAG---ATGCGGTGCTTAGTTTATGAGCTCATCCCCAATGGGAGCGTTGAGTCGCATTTACATGgtgagcgctttattttcatggtggctggatgtatttgtgagccaagttctattgaaatctttctgagttactttttcatttcagataatgtcaccaggtt-------------