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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgttttaccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G18470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G38110.1 (Glycine max), 5'ss of exon 4
GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgtt--ttaccgtatgataagattgttcgtga------cactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtag--
|| |||||||||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| ||||||||||||||||||   ||  | ||| |||  |   ||| |  ||        || | ||||||  | |   ||  | |  ||     |||   || |   |   |  |    |   
GTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGgtaatttttcatcaccatattcttttattctctgtaggaacttcaataaagaaatgtgataattaaaaatcaaagggattttgctcatgatatgcatgttaacacag

upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G07180.1 (Glycine max), 5'ss of exon 7
GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgttt--taccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaa--tctactttgcttctttccacaa-acatgtgtag------
|| |||||||||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| ||||||||||||||||||   ||    ||| |||  |   ||| |  ||   |    | | | | ||   |  || |||||    ||    | || |   ||  | |    ||         
GTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGgtaatttttcaccaccatattcttttattctctgtaggaacttaaataaagaaatgtgataaactaaaaattaaagggattttgctcatgatatgcatgccaacacag

upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G25490.1 (Glycine max), 5'ss of exon 5
GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgttttaccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtag
||  ||||||||||||| |||||||| ||   |||||  || || ||||| ||||||||||| |||||||| |||||||||       |||  ||| |   ||   |    | |  | | ||| | ||    |  | |      |   | | ||  ||   ||         ||
GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGGgtaatttcgccaccccatggtttaatacctacgtagaaactataaaga-aattgataaaaatgggaattaatagtttaattttgcatgttaaaacag

upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G06430.1 (Glycine max), 5'ss of exon 5
GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgttttaccgtatgataagattgttcgtgacact-caagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtag
||  ||||||||||||| |||||||| ||   |||||  || || ||||| || |||||||| |||||||| |||||||||       |||  ||| |   ||  |||  || |||  ||  ||  | |      | |       || |||  || |        | |       
GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGgtaatttcggcaccccatggtttaatacttctagaaactataaagaaagtgataaaaatggggattaatagtttaattttgcatgttgaaacag----