1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTGAAGACACTCTTTTTCCCCTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCTgtaagaaatcttatatgaatgcagactagttttttttccatgtatgagctatcaagaatttgatacaaaattttgattttatggttttacag
species | Arabidopsis thaliana |
transcript | AT2G17780.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCT CTTCAACTGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATGCTCTCATEST: gi|116401369|gb|EG443961.1|EG443961
genomic: CTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCTgtaagaaatc ... ggttttacagCTTCAACTGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATACTCTCAT
EST: CTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCT CTTCAACTGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATACTCTCATEST: gi|116401248|gb|EG443840.1|EG443840
genomic: CTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCTgtaagaaatc ... ggttttacagCTTCAACTGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATACTCTCAT
EST: CTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCT CTTCAACTGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATGCTCTCAT
genomic: CTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCTgtaagaaatc ... ggttttacagCTTCAACTGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATACTCTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAAGACACTCTTTTTCCCCTGTGGTACATTGGCAAAGATTTCCACTGTGGCAACTAGTAGGCAAATCTgtaagaaatcttatatgaatgcagactagttttttttccatgtatgagctatcaagaatttgatacaaaattttgattttatggttttacag
- - - - - - - - - - - - - - - - - GCAAAG