1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGAGCAGACCAGACTGTTGCAGCTGAACCTGAAGAGGCCGAAGAAGGGGAAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgattcatacactgttagtctctcgtgtttctgacggtctatattttatacttaagtcggaatcattgatcgaggttagctcataaactctctgtgcattgatttcctgaaccaaccag
species | Arabidopsis thaliana |
transcript | AT2G17390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGACEST: gi|86081509|gb|DR377266.1|DR377266
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGAC
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCTEST: gi|164196814|gb|ES051584.1|ES051584
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCT
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGEST: gi|124794969|gb|EH884648.1|EH884648
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAG
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGEST: gi|124815907|gb|EH900773.1|EH900773
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTG
EST: ACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCTEST: gi|301502460|gb|HO208000.1|HO208000
genomic: ACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCT
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCTEST: gi|125285016|gb|EL299101.1|EL299101
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCT
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGGAAEST: gi|125274385|gb|EL288470.1|EL288470
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAA
EST: TCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCTEST: gi|124855012|gb|EH939449.1|EH939449
genomic: TCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCT
EST: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGG
genomic: AAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgat ... aaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGCAGACCAGACTGTTGCAGCTGAACCTGAAGAGGCCGAAGAAGGGGAAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGgtaaactgattcatacactgttagtctctcgtgtttctgacggtctatattttatacttaagtcggaatcattgatcgaggttagctcataaactctctgtgcattgatttcctgaaccaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA