1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactgcatcttttgaatgctattcttgaaaacttgtttggacttctagatgaaaagaaaattcgtttgaaaatgactcaatcattcggtgtttgttatgcttgacttgcag
species | Arabidopsis thaliana |
transcript | AT2G03120.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGEST: gi|124947402|gb|EL023243.1|EL023243
genomic: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactg ... tgacttgcagGCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATG
EST: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG GCAGGACTATTTTTEST: gi|125304424|gb|EL318509.1|EL318509
genomic: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactg ... tgacttgcagGCAGGACTATTTTT
EST: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG GCAGGACTATTTTEST: gi|164089581|gb|EL994182.1|EL994182
genomic: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactg ... tgacttgcagGCAGGACTATTTT
EST: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTAEST: gi|125192206|gb|EL207160.1|EL207160
genomic: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactg ... tgacttgcagGCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTA
EST: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG GCAGGACTTATTTTTCTATGATATCTTCTGGGTTTTC
genomic: GAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactg ... tgacttgcagGCAGGACT-ATTTTTCTATGATATCTTCTGGGTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGgtaagaactgcatcttttgaatgctattcttgaaaacttgtttggacttctagatgaaaagaaaattcgtttgaaaatgactcaatcattcggtgtttgttatgcttgacttgcag
- - - GAGATG