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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag

Basic information

species Arabidopsis thaliana
transcript AT2G02710.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G02600.6 (Glycine max), 5'ss of exon 6
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag
       || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                 
------GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-------------------------------

upper sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 6
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag
          || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   ||     || || ||  ||||  |||  |   ||  |||       |  |||| |    ||  |         |  |    ||    ||   || || |                                 
----------GACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atgttgaca-gagtatttactagctgaaatataaatcttaaacgcctgtttttct---ttttgtcagtcgtttgttttcctcagtctgattggacagcagc-------------------------------

upper sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 6
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag
       || || || ||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||||||   |||    || || ||  ||||  |||  |   ||  |||     | |  |||||     |   |     |   |  |   |||    ||   || || |                                 
------GAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgta---atcttgaca-gagtatttactagctgaaatataaatcttaaacgtct-gtttttcattatctgtcagtcatttgttttccacagtccgattggacagca---------------------------------

upper sequence: AT2G02710.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 7
TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtac----atatcccttcatgactacatacttcctgtt--accaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttag
       || |||| ||| || |||||||||||||||||||| || || ||||| ||||| || |||||||||     || | |||| |   | | | | ||| |||   |  ||     |   ||| |    ||  |||    ||  |||| || | |||    | || |||                                         
------GAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAATGCCTCTGGCAAGgtatcattatgtgccttaacttccatagaattcatgtgtgaggaaggaactgaatctattgcattgaggcaagaattaaaaatcccagtat----tttacaaca----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116470457|gb|EG513049.1|EG513049
EST:     CATTTTGGAANNNNNNNCACATCTCACCAGTTCGTAATGCTTCAGGCAAG                         ACAGCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAA
genomic: CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcc ... ctttttttagACAGCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAA
EST: gi|116453954|gb|EG496546.1|EG496546
EST:     CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG                         ACAGCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAA
genomic: CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcc ... ctttttttagACAGCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAA