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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATAAAGTGGACTTGTACATAAATGGACATGATCACTGCTTGCAACACATTGGTTCTCACGGgtaaaattataagtacttatttgttgagtttaaaatgtttctttctctattaagttgttatattttgttgaaagaaagaaaacttaacatatattttggaaatggtgaag

Basic information

species Arabidopsis thaliana
transcript AT2G01880.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01880.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G26930.1 (Glycine max), 5'ss of exon 6
GAGAATAAAGTGGACTTGTACATAAATGGACATGATCACTGCTTGCAACACAT---TGGTTCTCACGGgtaaaattata----agtacttatttgttgagtttaaaatgtttctttctcta----ttaagttgttatattttgttgaaagaaagaaaacttaacatatattttggaaatggtgaag
| |||  | || ||    ||||||||||||||||| ||||||||||| || ||   ||    | |  |||||   ||||    | |  | | | |||   || || ||  |   |  |||     | ||| |  | |  ||||   ||| ||   |                              
GCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGgtaagcatatatcttactcttaaatggttagcttcaacatcatcactgttctgacattcaagcttctgtggtttgcataaacaatccag-----------------------------