Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag

Basic information

species Arabidopsis thaliana
transcript AT2G01250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 6
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactca-cgaattcttcttccatacaaaaccaa--aatcag---
||| ||| |||||||||||| |||||||||||||||||| |||||||||||||| ||| | ||||||||  || |     |||||    |  | ||| |||| ||   | || |||| ||| |     ||||   | || ||||    ||  ||  ||||   || | | ||||||| ||      |         || ||    
CCCAAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGTTACGGAAAGCTCAACAAGCAGAGGATTCCTCTTCAGAACAACAAAGTCATTGAGGAGgtatg---tttg-ctct-tgtag-----gctttcattgtgttgtatatatgcca--tttacagctaatcaaattcttatttggcctattgttggtcaaccattag

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G094051_T05 (Zea mays), 5'ss of exon 5
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttg-agatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttc--ttccatacaaaaccaaaatcag
||| |||||||||||||||| ||| |||||||||||||| || || |||||||| ||| | ||||||||  || || |  |||||    |  | ||| ||||||| | |  ||   ||||    ||   | ||| |  ||| ||||   |||| |   || | | | | ||  ||  |  ||   |     | ||       
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactctacatct---ggttcctgtgttctgtttatatatgacaatttaca-tgatgatctccaccttttggtgttctatcag------

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag
||| |||||||||||||||| ||| |||||||||||||| || |||||||| || ||| | ||||||||  || || || |||||    |  | ||| |||||||  ||||    |||||   ||    | | | |  | |  || |  |    | ||||     || ||     ||  ||||          | ||||
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaattta-----catgatgatctccaccatttggtgttcta-tcag

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G178807_T01 (Zea mays), 5'ss of exon 5
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag
||| ||| |||||||||| | ||||||||||||||| |||||||| || ||||| ||| | ||||||||  |  | |   |||||  | |  | ||| ||||||    ||  || | |     |  |      | |  ||   | |  ||  ||| |||  | || | | ||  ||     |          |    ||
CCCGAACCTGAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTATGGGAAGCTGAACAAGCAGAGGATTCCGCTTAGCAACAACAATGTCATCGAGGAGgtttt---tccatc-cacaactaccgtgctgaatctgattacatccacattccaa-tttccgccttatgtatattttgcttaccttctgttcattatag

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G100225_T01 (Zea mays), 5'ss of exon 5
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgt------ctctctgtggctcttgcttctttagttttgttctgatatca-----agtttaagactcac--gaattcttcttccatacaaaaccaaaatcag
||| ||| ||||||| || | ||| || |||||||||||||||||||| ||||| ||| | ||||||||  |  | |   |||||  | |  ||||| |||||||  | |||         |  ||  | |   | |  |    ||  || |  || |||     ||  | |||   |   || |  || ||  |             | ||
CCCCAACCTGAAGAGCGTTAGGGAGTTAATCTACAAGAGAGGTTACGGGAAGCTGAACAAGCAGAGGATTCCACTTAGCAACAACAGTGTCATAGAGGAGgtttgtcacctgcaacaactaccgtgctgattccgataatccgattaggtccacatttcagttccagccttagataaaaaagagtctttgttttactttctgtgcgtgttag

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 6
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagt---tttgttctgatatcaagtttaagactcacgaattcttcttc-catacaaaaccaaaatcag
||| |||||||| ||||||| ||| |||||||||||||| || || ||||| || ||| | ||||||||  || || |  |||||    |  | ||| |||||||  | || |    ||||   ||| | | || |  |   ||| |  |  | |  | || |  | | ||    |  ||| | | |           |||||
CCCAAACTTGAACAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaact-tggaactgtacatctggttcctgtgttctgtttatatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcag

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 6
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaac-caaaatcag
|||||| ||||||||||| |  ||||||||||||||||| || || |||||  ||||| | ||||| || |||||||| |||||||||||| | || |||||  | |   | | | ||||| |  ||    |    | ||   ||    | |    | ||  ||| | |  || |||    | | || |  |||   |||
CCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtggtctat-tctgtagtcctc-tgtaaacacttccattgct-tgtttgttctattactta-gtttttttccctgacataacattcaatgccag

upper sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag
|||||| ||||||||||| || ||||||||||||||||| || || |||||  ||||| | ||||| || || || | ||||||||||||||| || ||||| ||      || |  | |    || |  ||   ||  |   ||    | |    | ||  |||||    ||   ||  |||| | |  |||   |||
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgt--ctggtgtaccggctagtcatctttaaatatctccattgct-tgtttgttctattactcagttttttcgctgacata-acattcaatgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125238967|gb|EL253052.1|EL253052
EST:     AGCTTAACCACCAGAGGATGGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTG
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTG
EST: gi|124710337|gb|EH801739.1|EH801739
EST:     ACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: ACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|125020635|gb|EL092904.1|EL092904
EST:     ATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: ATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|125173756|gb|EL195093.1|EL195093
EST:     CTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGTCATGGTATCATTTGCACTGAGGATTTGATCCACGAGAT
genomic: CTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAG-CATGGTATCATTTGCACTGAGGATTTGATCCACGAGAT
EST: gi|164042517|gb|ES192557.1|ES192557
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCC
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCC
EST: gi|125036201|gb|EL108470.1|EL108470
EST:     TGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: TGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|124967112|gb|EL041169.1|EL041169
EST:     ACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: ACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|125220183|gb|EL234268.1|EL234268
EST:     ACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGA
genomic: ACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGA
EST: gi|164093231|gb|ES136148.1|ES136148
EST:     CCAGAGGATAGCTTTGACTAACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTG
genomic: CCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTG
EST: gi|164145295|gb|ES016093.1|ES016093
EST:     GACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: GACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|164163003|gb|ES188025.1|ES188025
EST:     TATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGACT
genomic: TATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|125222755|gb|EL236840.1|EL236840
EST:     AGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: AGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|124945872|gb|EL021841.1|EL021841
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCA
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCA
EST: gi|86083519|gb|DR379278.1|DR379278
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|124803332|gb|EH891761.1|EH891761
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGA
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGA
EST: gi|124864734|gb|EH949171.1|EH949171
EST:     ATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: ATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|125314792|gb|EL328877.1|EL328877
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTG
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTG
EST: gi|125276761|gb|EL290846.1|EL290846
EST:     CTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: CTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|125217031|gb|EL231114.1|EL231114
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGAT
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGAT
EST: gi|164170966|gb|ES017502.1|ES017502
EST:     CTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: CTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|164230259|gb|ES107232.1|ES107232
EST:     TTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: TTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|124710053|gb|EH801455.1|EH801455
EST:     TATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: TATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|86082419|gb|DR378178.1|DR378178
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|124852708|gb|EH937145.1|EH937145
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAA-GCATGGTAT
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTAT
EST: gi|164037665|gb|ES140070.1|ES140070
EST:     CCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTAGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGA
genomic: CCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTT-GGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGA
EST: gi|164001947|gb|ES109409.1|ES109409
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATG
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATG
EST: gi|86082295|gb|DR378054.1|DR378054
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|47828829|gb|CK118513.1|CK118513
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATT
EST: gi|124779754|gb|EH869697.1|EH869697
EST:     CTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGA
genomic: CTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGA
EST: gi|125238751|gb|EL252836.1|EL252836
EST:     AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCGG                         GCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACG
genomic: AGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatc ... ccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG