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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgttagaatttttccttgttgttccatgttataacttgcgcatgagagttctaagtgctaacaatgctgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag

Basic information

species Arabidopsis thaliana
transcript AT1G80670.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G13780.1 (Glycine max), 5'ss of exon 5
GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgttagaatttttccttgttgttccatgttataacttgcgcatgagagttctaagtgctaacaatgctgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag
 ||||| ||    |||||| || |  | |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||| |||||||||||||||| | | ||  |  ||| |     || ||      ||    |   |    |   ||| || |||    |  | || | |   | ||  | ||    |||  ||                                                                                 
ACTTCCTGATCGTTGTTATGCAATAACAGTGAAACATCCTCTGATGGTAGTGGGAACTGCTGATAGAAATCTGATTGTCTTCAACCTGCAAAATCCTCAGgtgatatttaatttttgctaaaatattttcagtgctgttgcttgtaaccttgtatgc-aataatag-atttgtataataatttattatgtatata-gatagat---------------------------------------------------------------------------------

upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G09290.1 (Glycine max), 5'ss of exon 5
GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgttaga----atttttccttg--ttgttccatgttataacttgcgcatgagagttctaagtgctaacaatgctgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag
 ||||| ||    |||||| || |  | |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||| |||||| ||||||||| | |    |||||| ||    |  || |||||| |  ||||      |   || || |   ||| |    |||   ||| |  |   ||  |   ||  || ||                                                                                    
ACTTCCTGATCGCTGTTATGCAATAACAGTGAAACATCCTCTGATGGTAGTGGGAACTGCGGATAGAAATCTGATTGTCTTCAACCTGCAAAGTCCTCAGgtgatatttcattttttctaaaatcttttcatgttgttgcttgt-----aaccttgtatgcaataatagatttgttt-cattatgtaaattatgatttttttgctc------------------------------------------------------------------------------------

upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G19260.1 (Glycine max), 5'ss of exon 5
GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgttagaatttttccttgttgttccatgttataacttgcgcatgagagttctaagtgctaacaatgc-tgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag
 || |||||    || ||| |  || | |||| |||||||||||||||||| || ||||| ||||||||||| || || | ||||||||||||||||||||| | | ||||    |  | |      |   || ||    ||   | ||   | |  |   | | | | || |      ||    ||  ||  || ||   |                                                                                   
ACTCCCAGAGCGCTGCTATGCTATGACAGTGAGACATCCTCTGATGGTTGTTGGCACTGCTGATAGAAATCTTATTGTTTACAACTTGCAAAATCCTCAGgtaatacttttattctaatttagttaatctcaaatta---attgtattttccattatttgtattacctttcggtcatgtattcacttatgatatcatggctat----------------------------------------------------------------------------------

upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G05740.1 (Glycine max), 5'ss of exon 5
GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgttagaatttttccttgttgttccatgttataacttgcgcatgagagttctaagtgctaacaat-gctgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag
 || |||||    || ||| |  || | |||| |||||||||||||||||| || ||||| ||||||||||| || || | |||||||||||| |||||||| | | ||||    |  | |      |   || ||    ||   | ||   | |  |   | | ||| || |    | ||  | ||   |  || ||   |                                                                                   
ACTCCCAGAGCGCTGCTATGCTATGACAGTGAGACATCCTCTGATGGTTGTTGGCACTGCTGATAGAAATCTTATTGTTTACAACTTGCAAAACCCTCAGgtaatacttttattctaatttagttaatctcaaatta---attgtattttccattatttgtattagctttcggtcatatattctcttattatatcatggctat----------------------------------------------------------------------------------

upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0002g09150.t01 (Vitis vinifera), 5'ss of exon 5
GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgttagaatttttccttgttgttccatgttataacttgcgcatgagagttctaagtgctaacaatgctgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag
 || || ||    |||||| | ||  | |||| |||||||||||||||||| || ||||| ||||||||| ||||||| || |||||||| || |||||||| |   ||||| | | || | |  || | | |||      ||  | |  ||  | || ||  ||  |   |||  | ||| ||  |   ||| |    |||  |  |  ||                                                                        
ACTCCCTGATCGCTGTTATGCTTTTACCGTGAGACATCCTCTGATGGTTGTTGGCACTGCTGATAGAAATTTGATAGTTTTTAACTTGCAGAACCCTCAGgtcatg-ttttttcatcttatgcattgat-tgactgatatttgcta-tcatactttcttac--tgtggctggcaatatatgcttcag---atttg----caagatgacatat------------------------------------------------------------------------

upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv12s0055g00900.t01 (Vitis vinifera), 5'ss of exon 6
GCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCAAAATCCTCAGgt-tagaatttttccttgttgttccatgttataacttgcgcatgagagttctaagtgctaacaatgctgtcagcatcacatggttttgggaattcgtgatcaatttagcccatgtgctatcttacaaagaatagatgaacaggctttcaccattagattaacagtttctcttgtgtaaactgtag
 || || |||   |||||| || |  |||||| ||||||  |||||||||| || ||||| ||||||||||| ||||| || ||||||||||| |||||||| |   |||| | ||  | | |  |    ||||  |   ||     ||| |  |  ||       ||   | | ||| |||   ||  | || | | |  |||                                                                                 
ACTCCCTGACCGTTGTTATGCACTAACTGTGAGACATCCCTTGATGGTTGTTGGCACTGCAGATAGAAATCTTATAGTTTTTAACTTGCAAAACCCTCAGgtattacatttcttctcatgggttaagtgaataatcttttca-actggttatttgctct-----ctcttgaatcttcagatg--cttaagcat-cataaataataatat----------------------------------------------------------------------------