1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAATAAACAGCATGGCTCAGATGACGCGAACAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttcttgtttaacttatgataatattcagtttggtgtcttgtagcttcacacagttattaaggtgttctttgctttatcag
species | Arabidopsis thaliana |
transcript | AT1G80480.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAG AATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCAEST: gi|125048763|gb|EL121032.1|EL121032
genomic: AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttct ... gctttatcagAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCA
EST: AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAG AATCGAAAGCTCTGTGAAEST: gi|124886070|gb|EH964972.1|EH964972
genomic: AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttct ... gctttatcagAATCGAAAGCTCTGTGAA
EST: CTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAG AATCGAAAGCTCTGTGAATGAAGATGAT
genomic: CTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttct ... gctttatcagAATCGAAAGCTCTGTGAATGAAGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATAAACAGCATGGCTCAGATGACGCGAACAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttcttgtttaacttatgataatattcagtttggtgtcttgtagcttcacacagttattaaggtgttctttgctttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG