Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTTGTACATTGCTGGAAGCAGTTCCTCACTTCAACTACCGTGATAACCTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttcttttaaccctttttcagagtgacgaataatgtctaactgatataccatggaatctaacgtaaagtagaactgttaatatctcttgtgtcatagtcatgtcattttactgcaattgcatccatttcgttcctatctaactcatttcttgcaccggtttgggtatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G79150.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116381025|gb|EG423617.1|EG423617
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393370|gb|EG435962.1|EG435962
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393384|gb|EG435976.1|EG435976
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393385|gb|EG435977.1|EG435977
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTTTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393389|gb|EG435981.1|EG435981
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTTTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116381024|gb|EG423616.1|EG423616
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGATTCTGTTGCTTTACTATCAGGTATCTTTTTTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393383|gb|EG435975.1|EG435975
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTTTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393380|gb|EG435972.1|EG435972
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTTTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393373|gb|EG435965.1|EG435965
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393392|gb|EG435984.1|EG435984
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393391|gb|EG435983.1|EG435983
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
EST: gi|116393388|gb|EG435980.1|EG435980
EST:     CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAG                         GAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA
genomic: CTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttc ... gggtatgcagGAGACTCTGTTGCTCTACTATCAGGTATCTTTTCTCAAATGAAGGGAAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTTTGTACATTGCTGGAAGCAGTTCCTCACTTCAACTACCGTGATAACCTGTTAATTGCTGTTGTCAGAAATATCAGCTCCCCAGATGAAGTCGTAAGgtcctggttcttttaaccctttttcagagtgacgaataatgtctaactgatataccatggaatctaacgtaaagtagaactgttaatatctcttgtgtcatagtcatgtcattttactgcaattgcatccatttcgttcctatctaactcatttcttgcaccggtttgggtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG