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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTGTGGTTGGGCGTGGGTTCACCAGGCTCAATGAATGTTACTGACCgtaagtcttctgctcttttttttttatgaaaaatattcattttcgtcttgtgtgtatattctataatcattgtactgagtttcaaaaagttattgttatc...

Basic information

species Arabidopsis thaliana
transcript AT1G78920.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G24120.2 (Glycine max), 5'ss of exon 6
GTTGTTGTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTGTGGTTGGGCGTGGGTTCACCAGGCTCAATGAATGTTACTGACCgtaagtctt--ctgctcttttttttttatgaaaaatattcattttcgtcttgtgtgtatattctata-atcattgt-actgagtttcaaaaagttattgttatc
 ||||||||||||||||||| |||||||| ||  |||| ||| | ||||||||||| |||||||  ||||  || ||||| |||||||| ||||||||  ||| || ||  || |||    |   |||| |  |  | |   |||  | |  ||| || | | |  | ||  || | | |||   |  |   ||   ||     
ATTGTTGTTGGTATGGCTGTAATTGGTATAGCAGTCCTTTATGCCACATTTTATGTTTGGTTGGAAGTGGACTCGCCAGGTTCAATGAAGGTTACTGATTgtatgtgttgacttctccccctaacttattatcataaattgattttttttaatgtttaaaatttgaatattgttattattgaacctgcatgggtgggtgc----

upper sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 6
GTTGTTGTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTGTGGTTGGGCGTGGGTTCACCAGGCTCAATGAATGTTACTGACCgtaagt-----cttctgctcttttttttttatgaaaaatattcattttcgtcttgtgtgtatattctataatcattgtactgagtttcaaaaagttattgttatc
 |||| ||||||||||| || |||||||| ||  |||| ||| | ||||||||||| |||||||| ||||  |  || || |||||||| ||||||||  ||| ||     ||||| | | |    | |||| | ||||     ||||  |  ||| || |  ||  ||| |  |  || |||   |  |   || | ||     
ATTGTCGTTGGTATGGCCGTAATTGGTATAGCTGTCCTTTATGCCACATTTTATGTTTGGTTGGGAGTGGACTTGCCTGGTTCAATGAAGGTTACTGATTgtatgtgtagacttctccccctaacctattatcataaattgatttttttttaatgtttgaaatttaaatactgttattattgaacctgcatgggtgagtg-----

upper sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 6
GTTGTTGTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTGTGGTTGGGCGTGGGTTCACCAGGCTCAATGAATGTTACTGACCgtaagtcttctgctcttttttttttatgaaaaatattcattttcgtcttgtgtgta-tattctataatcattgtactgagttt-caaaaagttattgttatc-----
|||||||||||||||||||| |||||| | |||||||| ||| | ||||||||||| ||||||||||| | |||  |||| |||||||| ||||||||  ||||||  | |  |  ||| ||| | |       ||| |||  | |      | || || |  |  || |      ||| ||   |   | ||  | | |||     
GTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCGTAGATTCGACAGGTTCAATGAAGGTTACTGATTgtaagtagtttatttgtttatttattt-------atttattaccatgaaacttataatacttaactataaaaactatgaattcatatgtatttcatatcatcatata