1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
ACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggtttactccatatgcctgtctatggaagtgttcatttggttttaatcttgatggtcaattgaattcgttttgtttgcag
species | Arabidopsis thaliana |
transcript | AT1G78900.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGATTGTCTTTGGGAGTTCCGGCCCAATAAATTTG TCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTEST: gi|116482298|gb|EG524890.1|EG524890
genomic: AGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggt ... ttgtttgcagTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCT
EST: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTG TCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTEST: gi|116482299|gb|EG524891.1|EG524891
genomic: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggt ... ttgtttgcagTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCT
EST: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTG TCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTEST: gi|301502302|gb|HO207842.1|HO207842
genomic: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggt ... ttgtttgcagTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCT
EST: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTG TCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTEST: gi|116415256|gb|EG457848.1|EG457848
genomic: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggt ... ttgtttgcagTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCT
EST: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTG TCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCT
genomic: TCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggt ... ttgtttgcagTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaatgtggtttactccatatgcctgtctatggaagtgttcatttggttttaatcttgatggtcaattgaattcgttttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC