1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaactaagaggacaattattccattgagatctctgaagcaatgtttcatttgttcttaaaaatgtcaattccttatattgatag
species | Arabidopsis thaliana |
transcript | AT1G76030.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAG GAAGTACAATCAACCCCACGTGAAAGAACCTATCCTGAAGAGATGATACEST: gi|124941646|gb|EL017981.1|EL017981
genomic: GATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaact ... atattgatagGAAGTTCAATCAACCCCA-GTGAAAGAACCTATCCTGAAGAGATGATAC
EST: GATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAG GAAGTTCAATCAACCCCAGTGAAAGAACCTATCCTEST: gi|124733039|gb|EH824441.1|EH824441
genomic: GATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaact ... atattgatagGAAGTTCAATCAACCCCAGTGAAAGAACCTATCCT
EST: ATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAG GAAGTTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGAEST: gi|124757955|gb|EH848085.1|EH848085
genomic: ATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaact ... atattgatagGAAGTTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGA
EST: ATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAG GAAGTTCAATCAACCCCAGTGAAAGAAACCTAATCCTGAAGAGATGATACA
genomic: ATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaact ... atattgatagGAAGTTCAATCAACCCCAGTGAAAGAA-CCTA-TCCTGAAGAGATGATACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaactaagaggacaattattccattgagatctctgaagcaatgtttcatttgttcttaaaaatgtcaattccttatattgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC