Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaactggtctcttatatacaacttacattcagccttggaaacttaaatcatttcctatgtattaaggctggttttgggacgatattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G75380.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75380.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv18s0001g12960.t01 (Vitis vinifera), 5'ss of exon 7
GTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaactggtctcttatatacaacttacattca--gccttggaaacttaaatcatttcctatgtattaa--ggctggttttgggacgatattgcag
|| |  |||||| |||||||||| || || ||||||||||||||||| ||||||| |||  ||||||  |    ||| | |      |     ||| ||| |  |||||| |       |     | |     || ||  | |  | | | ||| |    |||||
GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAGTTATACCTCACAAAGgcatattcctgctgtaccccttgttcttta-attgattgccttgtacttcattagaggatacaggtgatcaattgacatgatgttggatgtggatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124988151|gb|EL060557.1|EL060557
EST:     GCATATTTTGCCCAGTTATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
genomic: GCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
EST: gi|125211830|gb|EL226784.1|EL226784
EST:     GTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG
genomic: GTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG
EST: gi|124977976|gb|EL051242.1|EL051242
EST:     AGTTCACGAGGCATATTTTGCCCAGTTATTTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
genomic: AGTTCACGAGGCATATTTTGCCCAGTTA-TTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
EST: gi|125089298|gb|EL147720.1|EL147720
EST:     CCCAGTTAATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
genomic: CCCAGTT-ATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
EST: gi|125261697|gb|EL275782.1|EL275782
EST:     TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG
genomic: TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG
EST: gi|124955850|gb|EL030827.1|EL030827
EST:     TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAG
genomic: TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAG
EST: gi|125319250|gb|EL333335.1|EL333335
EST:     TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGA
genomic: TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGA
EST: gi|47829045|gb|CK118729.1|CK118729
EST:     TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAG                         GTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA
genomic: TCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGgtctgcaact ... gatattgcagGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCA