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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTGTATATATCGCTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatgtgtagtgactaattcctgttttgacttttgtgtactgactcgtaatgctaaacaagaaatgttgtgtaacttcttgctgtag

Basic information

species Arabidopsis thaliana
transcript AT1G75220.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124993757|gb|EL066026.1|EL066026
EST:     TATGAGAGGAGGATTGGGTTCGGTTAACCAG                         CTTTCTGTGACAATTGGAATAATGTTGGCGTATTTA
genomic: TATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTA
EST: gi|86059936|gb|DR355693.1|DR355693
EST:     CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAG                         CTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTT
genomic: CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTT
EST: gi|125179520|gb|EL197214.1|EL197214
EST:     TGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGGTTCGGTTAACCAG                         CTTTCTGTGAACAATTGGAATAATGTTGGCGTATTTACTTGGCCTC
genomic: TGAGATAGCTCCACAAAATATGAGAGGAGGATTGGG-TTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGA-CAATTGGAATAATGTTGGCGTATTTACTTGGCCTC
EST: gi|125217875|gb|EL231958.1|EL231958
EST:     CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAG                         CTTTCTGTGACAATTGGA
genomic: CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGACAATTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACCTGTATATATCGCTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatgtgtagtgactaattcctgttttgacttttgtgtactgactcgtaatgctaaacaagaaatgttgtgtaacttcttgctgtag

- - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - -  GAGGAT