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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGTCTCATATGATCTTCCTCAGTTTGTTTCTCACTCTCAGTCCTATAGATTTCCATCTGGATGCTTGATTCAGGATATGCCCAATGGATATTCCAAGgttaaacttctttttcctctgtcaactaaatcatgttttcatgttagaatatccctaaactgatgaattgaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G73360.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73360.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 6
-AAACGTCTCATATGATCTTCCTCAGTTTGTTTCTCACTCTCAGTCCTATAGATTTCCATCTGGATGCTTGATTCAGGATATGCCCAATGGATATTCCAAGgtta--aacttctttttcctctgtcaa--ctaaatcatgttttcatg--ttagaatatcc-----ctaaactgatgaattgaaacag
  |   | ||    ||     | |||||||   ||||   ||  ||  ||||  |||| ||||| ||||||||||| ||||||||||||||||| |||||||||   || |           ||| ||  ||   | ||  ||||| |  ||  | ||  |     |||  || |    |||   |||
TTATGATTTCCCCCGAGACAAC-CAGTTTGCCCCTCAAAATCCATCTCATAGGCTTCCTTCTGGCTGCTTGATTCAAGATATGCCCAATGGATACTCCAAGgttttcaagtcaaaaacttgatgttaatcctctgtgattctttcaggatttgcagtactcaaaacctattctaaaatgttggtgcag